PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g27901.1.p
Common NameBRADI_1g27901
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 277aa    MW: 30943.3 Da    PI: 11.2583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g27901.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.7e-22112159249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                       +i ++s+rqvtfskRr g++KKA+EL+ LC+a+ a+++fs+ g+ + +
  Bradi1g27901.1.p 112 PIADTSRRQVTFSKRRSGLFKKASELCALCGADLALVVFSPAGRAFAF 159
                       6899**************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.315103163IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-27103162IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-24104172IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-19105125IPR002100Transcription factor, MADS-box
PfamPF003191.2E-23113159IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-19125140IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-19140161IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MFRAVASIGH ELKGTSTPRE ENVLATMMKH GQIHPSTNEG EKKRRKENRS SLRLIEKQSL  60
IAGMRIPNPH RPPHSRDTNN TRLASVLRRE REIKQRALQM ASRGRQRIEI RPIADTSRRQ  120
VTFSKRRSGL FKKASELCAL CGADLALVVF SPAGRAFAFG NPSADHVLRR HVPLDSDDGG  180
GAQPLPVLDE RAEREAAVAA RTELEEAKAR VGAEQARLGA VEEKVRLAMA GRPFYWEADV  240
VALGEAELRE FARALLRLRD DVRRRQNALL SDNDNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14145KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g27901.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693390.0KF469339.1 Brachypodium distachyon MADS-box transcription factor 45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288318.11e-122agamous-like MADS-box protein AGL61-like
TrEMBLA0A0Q3KYP40.0A0A0Q3KYP4_BRADI; Uncharacterized protein
STRINGBRADI1G27900.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-26AGAMOUS-like 61