PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g26960.1.p
Common NameBRADI_1g26960, LOC100837658
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 811aa    MW: 92521.9 Da    PI: 6.3373
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g26960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.65.6e-2057143190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++  t+tgCkak+ vk  + +++wev+ leleHnH+l 
  Bradi1g26960.1.p  57 QFYVAYGCHSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 143
                       6****************99988..9999**************99877..77788889***************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1757144IPR004330FAR1 DNA binding domain
PfamPF105512.1E-20260353IPR018289MULE transposase domain
PfamPF044341.2E-6542574IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.458542578IPR007527Zinc finger, SWIM-type
SMARTSM005756.6E-4553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MEEEDYITES SNEEDVQEDG EKDISITEGD VFKPVDIEQE LVPKVGMVFD SEEDAFQFYV  60
AYGCHSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKMIV  120
KDAHFQNRWE VIVLELEHNH PLDPSLLKYK KHLKDSPFSL NPPHMSETPQ SSSGAAHSSR  180
DGDGGIPSCA QIEFKSKVDR NRKLKLAEGD LEALLSFFNG MQDRNPCFFY CLDMNDQGQL  240
RNVFWADAKS RSSYNYFGDV VAINATNFSD QYDIQFVSFV GTNHHANPVL LGCALLAGRS  300
LGAYVWLFDT WLRCMNGIPP SSVITNHCHD VAIAVKKVFR NARHRFCLWH ILNELPEKLD  360
GMGKKDEMIS TFSALAYDSV TMPDFDKGWQ EMTQQFHLEG NEWLSNLYEV RMQWAPVYVK  420
DSFWAGLSVT DRSDSATDYF DGWLMSGTSV KMFVEQYEST VRSKLEKESH DDLQSSQLRP  480
QMMTGLPVEE QAAKMYTIEI FQMFLNEIGH SFHCNYNILD RSDSGVTYIV SEHVNRAKKV  540
DYKVAYNNGE DDIWCLCRLF QSKGILCRHA LTVLRQELVL MIPPKYIIHR WCKDYKQTCV  600
LKSQTVSVST QELGSYDDLY KSSHQYFTEV VELGSVNLES KEYAFSIMRE VRDKVISYEK  660
SLRDQRVDSH VSTANFAYNP VNEDFTDDAL PISLSTKSWD LMQGQSKRSR KKKLATPTVL  720
DTLKKKTKRA YNKRRNATAN NLNTTITTTD SVTDNTNVQQ NQVNEGWSLT STGAPETFPF  780
GVENISFDLS QYNNAPSFHW PESSSRSQLQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g26960.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563072.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1GU800.0I1GU80_BRADI; Uncharacterized protein
STRINGBRADI1G26960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1398944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-112FAR1-related sequence 6