PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g24270.1.p
Common NameBRADI_1g24270, LOC100838970
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 662aa    MW: 70714.1 Da    PI: 6.8911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g24270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08272294426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++f+r G C+ Gd+C F+Hg
  Bradi1g24270.1.p 272 VPCPNFRRPGGCPSGDNCEFSHG 294
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.8E-1323141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-1263144IPR020683Ankyrin repeat-containing domain
SMARTSM00248866594IPR002110Ankyrin repeat
PfamPF127965.9E-965133IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.24565141IPR020683Ankyrin repeat-containing domain
CDDcd002041.02E-1167144No hitNo description
SMARTSM002485.8E-4101133IPR002110Ankyrin repeat
PROSITE profilePS5008812.583101136IPR002110Ankyrin repeat
SMARTSM003563.6E-4268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126268296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5269297IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6272294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6272295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4301333IPR000571Zinc finger, CCCH-type
SMARTSM0035621304327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MGDLPDPARA QVAGGGRRDK LAALLELAAA DDVDGMREAL ELAGEEAAEL ADEVGLWYGR  60
SKAYEPRTPL MVAATYGSAR VVSLLLGLSG YVDVARRPGV DGFTALHCAA SGGSSNAVPV  120
VKMLLDAGAD LATPDCAGRF PADVIRAPPA SPDALGDLEM LLGRRRALAV ATSAASGASS  180
PPLSSSPDDE GNRSPSSLSP ITVDRGKKEY PVDPTLPDIK SSVYASDEFR MYAFKVRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPSGDNCE FSHGVFESWL  300
HPTQYRTRLC KEGAACARRI CFFAHDEEEL RHVPHNSGAG LLSPRATSSI DMSAAAQLGL  360
LQGSPRHFGP PPGSPSAGSN GGGTAPHWLQ GSRLRSSFNA RDATAEDLGM LLDWESQYLG  420
ALCLPSSSRP QPRLSTGLSV RPTAIAPSTL EDMYASDLAM SPRFTNDQAH SVYSPAHKSA  480
MLNKLHQQKG LLSPVNTNRL YSPRGLDPSA LVHSPIGGMS PRSPRVMEPT SPLSARFGAS  540
HTQREMFEQF ASLNKHQLPS TGSPRNSNSS WGNMGSPMGK VDWGVDGDEL VRLRRPEQSG  600
LAEKEPDVSW GQSPNGRRGE MLGNAGGLAS GSTNRTDWNN QADLLDQTAI GAWLEQHMDQ  660
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g24270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562905.10.0zinc finger CCCH domain-containing protein 50
RefseqXP_024312449.10.0zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLI1GTB10.0I1GTB1_BRADI; Uncharacterized protein
STRINGBRADI1G24270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-136CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]