PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g20090.1.p
Common NameBRADI_1g20090
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 278aa    MW: 29814.9 Da    PI: 6.7809
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g20090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41.1e-191761145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      krie++  rqv fskR+ g++KK  ELSvLC+++vav++fs+ g+
  Bradi1g20090.1.p 17 KRIESEEDRQVCFSKRQIGLFKKVTELSVLCGMQVAVVVFSPAGN 61
                      79****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-25968IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-24981IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.637969IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-161131IPR002100Transcription factor, MADS-box
PfamPF003193.2E-211861IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAPRRMPSMC RRKIAIKRIE SEEDRQVCFS KRQIGLFKKV TELSVLCGMQ VAVVVFSPAG  60
NALSLGHPSV DSVVDRLLAT FTANTKAAPG GSGAGFGVGS VPLSVAAAME AMAATVRMEL  120
GTKGEKTLLE LNKVYGELRA MMEKEKLRKE RAEEEIKKQL AEGRSPAAAW LDADLATLSE  180
SDLVEFQAAL MEMKDVVQLH PDEVLREART AATTRIMMQL DLMGQLPPPP PGMGHLPPPP  240
LGMGQLPPPP RMGFPETMDL PPPDFGPGGG FFSPPPC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g20090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693380.0KF469338.1 Brachypodium distachyon MADS-box transcription factor 44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234954.11e-167agamous-like MADS-box protein AGL61
TrEMBLA0A0Q3GWY80.0A0A0Q3GWY8_BRADI; Uncharacterized protein
STRINGBRADI1G20090.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-21AGAMOUS-like 61