PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g15581.3.p | ||||||||
Common Name | BRADI_1g15581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 41332.1 Da PI: 6.5191 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.2e-15 | 51 | 98 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l + v q+G g+W+++ r+ g+ R++k+c++rw ++l Bradi1g15581.3.p 51 KGPWTAAEDTMLMNHVLQHGEGNWNAVQRMSGLLRCGKSCRLRWTNHL 98 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.2e-16 | 104 | 147 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++ Bradi1g15581.3.p 104 KGSFSPQEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 147 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.857 | 46 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 48 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-28 | 49 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 50 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-13 | 51 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-9 | 53 | 98 | No hit | No description |
PROSITE profile | PS51294 | 22.332 | 99 | 153 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 102 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 103 | 151 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 104 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.85E-11 | 106 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MPMDQGKSSD MVAAPASPEE ENAAATGDSS DEEAPQNQMD NEQAPAAALK KGPWTAAEDT 60 MLMNHVLQHG EGNWNAVQRM SGLLRCGKSC RLRWTNHLRP NLKKGSFSPQ EELLIAQLHA 120 QLGNKWARMA SHLPGRTDNE IKNYWNTRCK RRQRAGLPVY PPEVQLQLAT AAKRCRYDDF 180 SGPLSSSSPQ ESGSSGNVLS LGLGAPDAAA GSYTSARPAA LDLAMGTRPV QFLNAPTMPF 240 SAPSTPWSTT PPFQRNARYL KLSSAPVSPT GAPPVHPVTP ELSLGGLPGT ARFPPLSPVP 300 GAARVELPSS QLRPAMQQPT PAPGGQQAAS ATAGVPQYQQ NGTSYEEILQ GLNDAIKPPE 360 NGSSVDANGQ QQEEADGVSE ENKMATSNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-28 | 49 | 152 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g15581.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042537 | 1e-116 | BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds. | |||
GenBank | KJ727532 | 1e-116 | KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751997.1 | 0.0 | transcription factor MYB33 | ||||
TrEMBL | A0A2K2DJN5 | 0.0 | A0A2K2DJN5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G15580.1 | 1e-128 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 8e-66 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g15581.3.p |