PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14677.9.p
Common NameBRADI_1g14677, LOC100840164
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 281aa    MW: 30572.4 Da    PI: 7.3199
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14677.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.9e-4271061100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrrkC+++Cv+apyfp +qp++fanvhk+FGasnv+kll++lp+ +reda++sl+yeAear+rdPvyG+v+ i+ lq++++ +++e
  Bradi1g14677.9.p   7 PCAACKLLRRKCTQGCVFAPYFPPDQPARFANVHKVFGASNVSKLLNDLPQAQREDAVNSLAYEAEARLRDPVYGCVAYISILQHRIKMVREE 99 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       ++++++e
  Bradi1g14677.9.p 100 IVSTRKE 106
                       *999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6816107IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-427104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DQPARFANVH KVFGASNVSK LLNDLPQAQR  60
EDAVNSLAYE AEARLRDPVY GCVAYISILQ HRIKMVREEI VSTRKELAGY VGQAAYAPFL  120
PAQQPHHAAQ FVPGMGLLQH PQQHQQQLMA AMHQQQQQQQ QQQGPYHHQQ IVDAQHMAAA  180
VEVAARGNQD MIMHHGFMPA AGGPTVAVVA PEAAAYEGGA QPFLIQQQQQ QPHPSAMTSY  240
RMEPSPPPQS SGHSHVDMPH HRQQHTDGSD DGSGGPPPPT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4741108114LOB family transfactor Ramosa2.1
5ly0_B3e-4741108114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14677.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369721e-124AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence.
GenBankAP0149591e-124AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-124CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232652.10.0LOB domain-containing protein 36
TrEMBLI1GQB00.0I1GQB0_BRADI; Uncharacterized protein
STRINGBRADI1G14677.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-60ASYMMETRIC LEAVES 2-like 1