PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14560.12.p
Common NameBRADI_1g14560, LOC100838040
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 689aa    MW: 77815.6 Da    PI: 9.0178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14560.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.8e-1521106899
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         d ++++ +v+p +f++++    ++   ++le ++g++++v +  +k+++r+++++GW+ F +an++  + +++F++ g s f  +v +f++
  Bradi1g14560.12.p  21 MDKNSRHSMVIPERFVNHFTRRMPG--NIKLEAPDGNVYDVGV--TKHRNRTIFQSGWETFLDANNIVHNNSLMFRYLGGSYF--KVALFDS 106
                        47788999********777545444..6***************..********************************998888..8888775 PP
2B341.22.9e-134585411598
                        -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                 B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                        +l++ k++a+ +   ++es  +tl+   ++++W  ++  rk ++++ +++ W++Fv +n+++egD+++F   +  ++ +++v+++r
  Bradi1g14560.12.p 458 CLIICKEYATVYF--PRESASVTLQRpGKSKKWHPRFYKRKDGSMHKIRGQWSDFVCDNRVEEGDICIFVPAKGgRRSTFTVHLLR 541
                        49999***99997..457778999995666*******66777778*************************6644466667888877 PP
3B350.14.8e-166096832097
                        HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                 B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                         +fa+ + ++k +  + +l + +g+ W  k+++r +  r vl++GW++Fv +n+L++gD+++F+l+++ ++ ++vv+++
  Bradi1g14560.12.p 609 AQFAAVY-LPKGG--QTMLLQHTGKIWHTKMRVRHGT-RWVLGEGWRKFVIDNRLQVGDICLFELKKNrRKLTMVVHII 683
                        5666555.33333..4677888*********755554.579*************************9889999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.64714107IPR003340B3 DNA binding domain
CDDcd100174.60E-1615105No hitNo description
SuperFamilySSF1019369.29E-1916109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-1716109IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-617107IPR003340B3 DNA binding domain
PfamPF023623.2E-1321105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-11221320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-11222320IPR015300DNA-binding pseudobarrel domain
CDDcd100176.76E-8227320No hitNo description
PROSITE profilePS508636.809229324IPR003340B3 DNA binding domain
SMARTSM010190.055229328IPR003340B3 DNA binding domain
PfamPF023628.1E-8236321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-18436541IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18437542IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-19443541No hitNo description
SMARTSM010192.2E-4443543IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856444543IPR003340B3 DNA binding domain
PfamPF023628.6E-12446541IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-19580683IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-20581686IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-19586683No hitNo description
PROSITE profilePS5086312.097588686IPR003340B3 DNA binding domain
SMARTSM010194.6E-7588687IPR003340B3 DNA binding domain
PfamPF023622.4E-14604683IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MSNTCECCKK CGKAKRFVRR MDKNSRHSMV IPERFVNHFT RRMPGNIKLE APDGNVYDVG  60
VTKHRNRTIF QSGWETFLDA NNIVHNNSLM FRYLGGSYFK VALFDSSGCE KVVPCPRIKS  120
IGQEPITSSV GMSSSSSYHN TQLSVSRSDG CHSGRRGNGA KRAKTYAASS PSEDLSGEDN  180
PYEHDSSESD DHIVPKPLYI LSVQCYLTEE QVARIVTLVD EIQPDMPLLV TLIRKPNVKP  240
YPDLVIPKDY ATAYFPHRSQ IITFQLAGQT KTWHCKFRAR PDGGRCNLYG CYFVRDNHLL  300
QGDLCLFQPM TNDEGTTFTV MTHVLPKASI DHPSDIIPSS ASTKMTSQVC VKEEQSDASR  360
RPVGCESGSS SHSRNTTNKT VISSPSEESG EDNPSGCNFF DSDDVCTPPG HDYVLSRWSY  420
LAEAQKEKVV MLIRKVQPRS RVFVAIMRKS NVQPLYPCLI ICKEYATVYF PRESASVTLQ  480
RPGKSKKWHP RFYKRKDGSM HKIRGQWSDF VCDNRVEEGD ICIFVPAKGG RRSTFTVHLL  540
RVENDMHAGP SDEQEKPYIL SQTSSLSPLQ QSLVEDKTQA IQSEAPLYVA IMNNTSVGVN  600
QRYTMEFGAQ FAAVYLPKGG QTMLLQHTGK IWHTKMRVRH GTRWVLGEGW RKFVIDNRLQ  660
VGDICLFELK KNRRKLTMVV HIIFSHQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1668675LKKNRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14560.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232581.10.0B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_010232586.10.0B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_024313261.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A0Q3NBF50.0A0A0Q3NBF5_BRADI; Uncharacterized protein
STRINGBRADI1G14560.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-12B3 family protein