PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g13570.5.p | ||||||||
Common Name | BRADI_1g13570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | YABBY | ||||||||
Protein Properties | Length: 145aa MW: 16599.7 Da PI: 9.1505 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 25.8 | 3.2e-08 | 6 | 25 | 5 | 24 |
YABBY 5 ssseqvCyvqCnfCntilav 24 +e+vCyv+CnfCntila Bradi1g13570.5.p 6 APAEHVCYVHCNFCNTILAE 25 5789**************85 PP | |||||||
2 | YABBY | 138.8 | 6.4e-43 | 25 | 119 | 73 | 170 |
YABBY 73 eelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 e + ++ ++++n++ + s+s+++ +++s+++d+e + +rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ Bradi1g13570.5.p 25 ESFRAHNISFRENYSDYGSSSKYRMPMMFSTKSDQEHTL---HVRPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPN 114 677899999********9999999888888887777663...49************************************************* PP YABBY 166 ihfgl 170 ihfgl Bradi1g13570.5.p 115 IHFGL 119 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.8E-6 | 7 | 27 | IPR006780 | YABBY protein |
Pfam | PF04690 | 1.6E-39 | 43 | 119 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-9 | 54 | 113 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-5 | 65 | 113 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MSAQIAPAEH VCYVHCNFCN TILAESFRAH NISFRENYSD YGSSSKYRMP MMFSTKSDQE 60 HTLHVRPPEK RQRVPSAYNR FIKEEIRRIK TNNPDISHRE AFSTAAKNWA HFPNIHFGLG 120 SNESSKKLDE AIVAPIPQQV QGLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g13570.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU099585 | 1e-141 | EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561769.1 | 3e-98 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 7e-78 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A0Q3J7Z7 | 1e-105 | A0A0Q3J7Z7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G13570.1 | 1e-97 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-42 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g13570.5.p |