PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g13570.2.p | ||||||||
Common Name | BRADI_1g13570, LOC100827245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20985.8 Da PI: 8.9864 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 242.1 | 1.1e-74 | 6 | 160 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q l++++h +e + ++ ++++n++ + s+s+++ Bradi1g13570.2.p 6 APAEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQDH--------SQESFRAHNISFRENYSDYGSSSKYRM 90 5689*****************************************************9........7788999**************999998 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++s+++d+e + +rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl Bradi1g13570.2.p 91 PMMFSTKSDQEHTL---HVRPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 160 88888887777663...49****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.0E-73 | 7 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.51E-9 | 95 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-5 | 106 | 154 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSAQIAPAEH VCYVHCNFCN TILAVSVPSN SMLNIVTVRC GHCTSLLSVN LRGLIQSLPV 60 QDHSQESFRA HNISFRENYS DYGSSSKYRM PMMFSTKSDQ EHTLHVRPPE KRQRVPSAYN 120 RFIKEEIRRI KTNNPDISHR EAFSTAAKNW AHFPNIHFGL GSNESSKKLD EAIVAPIPQQ 180 VQGLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g13570.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU099585 | 0.0 | EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561769.1 | 1e-138 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-115 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | I1GPY5 | 1e-137 | I1GPY5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G13570.1 | 1e-137 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 | Representative plant | OGRP2210 | 12 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-64 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g13570.2.p |
Entrez Gene | 100827245 |