PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g13207.1.p | ||||||||
Common Name | BRADI_1g13207, LOC100842799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 132aa MW: 14220.5 Da PI: 7.5547 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.2 | 3e-22 | 42 | 97 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++C +kkkve + dp+ + ++Yeg H+h Bradi1g13207.1.p 42 EDGYEWKKYGQKFIKNIQRIRSYFRCRDKRCGAKKKVEWQPGDPS-LRVVYEGAHQH 97 7****************************************9987.6899******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-24 | 32 | 100 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.429 | 36 | 100 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-21 | 37 | 100 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-21 | 41 | 99 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-20 | 42 | 97 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MASTSQPTPT EGVGEGAGHG DEEDQHAAEA AASSGQQLVM PEDGYEWKKY GQKFIKNIQR 60 IRSYFRCRDK RCGAKKKVEW QPGDPSLRVV YEGAHQHGSP SSSSSCTGAG HDGAANRYEL 120 SAQYFGGPRT Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g13207.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ806389 | 1e-89 | JQ806389.1 Hordeum vulgare WRKY transcript factor 48 (WRKY48) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231847.1 | 4e-94 | probable WRKY transcription factor 2 | ||||
TrEMBL | I1GPU4 | 9e-93 | I1GPU4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G13207.1 | 1e-93 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 1e-15 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g13207.1.p |
Entrez Gene | 100842799 |