PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13166.1.p
Common NameBRADI_1g13165
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 188aa    MW: 20114.1 Da    PI: 8.6869
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.36.6e-44211201100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cv+apyfp+++p++fa vhk+FGasn+ kll+++p e+r da+sslvyeA+ar+rdP+yG+vg i++lq+q+e+l+++
  Bradi1g13166.1.p  21 PCAACKLLRRRCAAGCVFAPYFPSSEPHRFASVHKVFGASNLNKLLQEVPAEHRGDAVSSLVYEANARMRDPIYGCVGAISSLQRQVESLQTQ 113
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       lal+++e
  Bradi1g13166.1.p 114 LALAQAE 120
                       ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.90720121IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-4321118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKDVVVAAGG GRAHPASSTP PCAACKLLRR RCAAGCVFAP YFPSSEPHRF ASVHKVFGAS  60
NLNKLLQEVP AEHRGDAVSS LVYEANARMR DPIYGCVGAI SSLQRQVESL QTQLALAQAE  120
MIRLKMGNAC AARRLGGSSS GGGSPSSSMS PEVARDCKPT ADLARMVVEY QPNMMEMELE  180
YSRFWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-48161282118LOB family transfactor Ramosa2.1
5ly0_B3e-48161282118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13166.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699115e-93BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBankKJ7276505e-93KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229521.11e-136LOB domain-containing protein 4
SwissprotQ8LBW31e-52LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0Q3GSR81e-135A0A0Q3GSR8_BRADI; Uncharacterized protein
STRINGTraes_4BS_E9E0C550B.17e-80(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.17e-45ASYMMETRIC LEAVES 2-like 9
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]