PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12780.4.p
Common NameBRADI_1g12780, LOC100836393
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 326aa    MW: 35090.4 Da    PI: 6.1085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12780.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13149195455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+ +N++f eL +++P +     kK++K +iL+ A +Y+k+L+
  Bradi1g12780.4.p 149 GHIMAERKRRETMNQRFIELSTVIPGL-----KKMDKGTILTDAARYVKELE 195
                       599************************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16149214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-11149195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-14150199No hitNo description
Gene3DG3DSA:4.10.280.106.1E-18150213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.558255325IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSYQQHRLPR RTDGMDDSSL FMQWAVNTLQ QEDPEAVAHD GGSENAFTSL PGLCDASASH  60
AGSLVQEPTE AIESWAAGLD AAMDQQGGWS TSPNSGGPPE PRSISMGRGG PANNQPAMSW  120
SFNAAAAACE RGVPEMAPRR AARSSSSQGH IMAERKRRET MNQRFIELST VIPGLKKMDK  180
GTILTDAARY VKELEEKIKS LQASSSDRRM SIESVVLIAP DYQGSRPRPL FSAVGTPSSN  240
QVPEIKATIS ENNVVVRIHC ENGKGLAVRV LAEVEELHLR IVNSNVTPFS ASTVIITAMA  300
KLDEGFTINA EEIVGRLNSV LHNHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12780.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659953e-49AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559602.20.0transcription factor bHLH19
TrEMBLA0A0Q3JPJ10.0A0A0Q3JPJ1_BRADI; Uncharacterized protein
STRINGBRADI1G12780.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP1191336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-35bHLH family protein