PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g11760.1.p
Common NameBRADI_1g11760, LOC100842904
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 762aa    MW: 81682.5 Da    PI: 6.4607
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g11760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07310330526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  Bradi1g11760.1.p 310 PCPDFRK-GVCRRGDMCEYAHG 330
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.8E-1087159IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-1589168IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.06990160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02590120IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.3E-1690168IPR020683Ankyrin repeat-containing domain
SMARTSM002480.095125157IPR002110Ankyrin repeat
PROSITE profilePS5008812.209125160IPR002110Ankyrin repeat
SMARTSM003561.1E-5305331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4309332IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4310330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375310332IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822340364IPR000571Zinc finger, CCCH-type
SMARTSM0035666340363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MNGMPISVST APSVDGGGGE DATPKKNAAA AAAVAEMAKH LTVDTDDAFA SLLELAAEDD  60
ADGLRRALES GPPAAADEAG LWYGRQKFME QRTPLMVAAT YGSLDALRLL LSLPSVDVNR  120
RCGHNDTTAL HCAASGGSPS AVEAVRLLIE AGADADAKDA SGCRPSDVIS VPPKMIDAKI  180
ALQDLLGFPK AEHGVLLVVT RATNLISSPV SSPTAENARS PSAAAMTMMM TKFADLPRVA  240
TSEKKEYPVD PSLPDIKNSI YASDEFRMYS FKIRPCSRAY SHDWTECPFV HPGENARRRD  300
PRKYHYSCVP CPDFRKGVCR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT GCNRRVCFFA  360
HTTDELRPLY ASTGSAVPSP RASATTAMEM AAAMGLMPGS PSSVSAVMSP FTPPMSPSSN  420
GMPPSLGWQQ PNVPTLHLPG SSLQSSRLRS SLSARDMPAD DYSLLQESDS QLINDLCYSR  480
LGSSTGNHTS RTKSLNPSNL DDLFSAEMVS SPRYSNADQG AMFSPSQKAA ILNQFQQQQQ  540
ALLSPINTGV YSTKAVDNQQ LPLHSSLLQA SLGISSPGRM SPRCVESGSP MNSHLAAALA  600
QREQQQQQQH QQQQQQQQTM RSLSSRDFGP SAARVSALVG SPLSSSWSRW GSPSGTPDWG  660
VNGEELGKLR RSSSFELRSG CDDDPDLSWV HTLVKESPPE KQVTAAESVN SVRPSPLIHP  720
SVSNGEGSGV NTRLDGRQQA AVIEALLEQM QLDEKVGNQA T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g11760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559545.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLI1GPB80.0I1GPB8_BRADI; Uncharacterized protein
STRINGBRADI1G11760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]