PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g09960.5.p
Common NameBRADI_1g09960, LOC100845245
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 324aa    MW: 35627.9 Da    PI: 5.6478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g09960.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10155203355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Bradi1g09960.5.p 155 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 203
                       58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.89E-11150207No hitNo description
SuperFamilySSF474599.95E-17150219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16152219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8155203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MYSGQQSDQG PSVNGGTEFL GGNWNSVATH PKMGYNSGPY GFQAYSMELE ERPGPYRSSS  60
GTFSQNIQLS VEPSGVVKKR KGIDDCTSLL NPSASSRMQN VGDQQTEVSS QTERNSLEEN  120
RTISPKMQSK EDSSDGDGTK EDYVHIRAKR GQATNSHSLA ERLRRKKISE RMKLLQDLVP  180
GCSKITGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPEL GFDIEQILSK QMMLSQDRHL  240
AFYGADPGSS TLAHFNQGIM QPDMMCNVSN PAGVLHGTFH EISAMNQMPE MWEALQNIPD  300
MNFNPAVAAD SSTNNAGTMK IEQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g09960.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753140.10.0transcription factor bHLH74 isoform X2
SwissprotQ6NKN95e-52BH074_ARATH; Transcription factor bHLH74
TrEMBLI1GNR40.0I1GNR4_BRADI; Uncharacterized protein
STRINGBRADI1G09960.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]