PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g09960.4.p | ||||||||
Common Name | BRADI_1g09960, LOC100845245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 35885.1 Da PI: 5.6478 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.4e-10 | 155 | 203 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Bradi1g09960.4.p 155 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 203 58**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.93E-11 | 150 | 207 | No hit | No description |
SuperFamily | SSF47459 | 1.01E-16 | 150 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.447 | 152 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 152 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-8 | 155 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 158 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MYSGQQSDQG PSVNGGTEFL GGNWNSVATH PKMGYNSGPY GFQAYSMELE ERPGPYRSSS 60 GTFSQNIQLS VEPSGVVKKR KGIDDCTSLL NPSASSRMQN VGDQQTEVSS QTERNSLEEN 120 RTISPKMQSK EDSSDGDGTK EDYVHIRAKR GQATNSHSLA ERLRRKKISE RMKLLQDLVP 180 GCSKITGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPEL GFDIEQILSK QMMLSQDRHL 240 AFYGADPGSS TLAHFNQGIM QPDMMCNVSN PAGVLHGTFH EISAMNQMPE MWEALQNIPD 300 MNFNPAVAAD SSTNNAGISG TMKIEQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g09960.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360959 | 0.0 | AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560304.1 | 0.0 | transcription factor bHLH74 isoform X1 | ||||
TrEMBL | I1GNR3 | 0.0 | I1GNR3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G09960.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 3e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g09960.4.p |
Entrez Gene | 100845245 |