PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g06970.1.p
Common NameBRADI_1g06970, LOC100833834
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 345aa    MW: 38169.9 Da    PI: 7.2984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g06970.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50351652128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++
  Bradi1g06970.1.p  35 LPGYRFHPTDEELVTFYLRRKVARKPLSI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIY 126
                       59***************************.99***************445556889************************************* PP

               NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+    +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Bradi1g06970.1.p 127 SAaaasSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 165
                       *988888889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.06634191IPR003441NAC domain
SuperFamilySSF1019414.45E-5635191IPR003441NAC domain
PfamPF023651.1E-2436165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVTYKEERDQ NQSIAMEKVK NNGEVVLGEE DDAALPGYRF HPTDEELVTF YLRRKVARKP  60
LSIEVIREMD IYKHDPWDLP KASTVGGEKE WYFFCLRGRK YRNSIRPNRV TGSGFWKATG  120
IDRPIYSAAA ASSGESIGLK KSLVYYRGSA GKGTKTDWMM HEFRLPAAAA ANASPSMQEA  180
EVWTICRIFR RNITYRKQQT WRPPPAAAVS TAVAADSSSN TAGSFESSDG GGDDYMAQAA  240
TTGPPCIIPH VQQHHGNLQL GATNGGFFSQ QFQGQWSSVP PPTLPLPDQK PLNPASAPIA  300
FHLNDHSLAA ASDLYKVDGY LEEIARMMEV TDPHPAAIYD YRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-503619722174NAC domain-containing protein 19
3swm_B8e-503619722174NAC domain-containing protein 19
3swm_C8e-503619722174NAC domain-containing protein 19
3swm_D8e-503619722174NAC domain-containing protein 19
3swp_A8e-503619722174NAC domain-containing protein 19
3swp_B8e-503619722174NAC domain-containing protein 19
3swp_C8e-503619722174NAC domain-containing protein 19
3swp_D8e-503619722174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g06970.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747281e-153AK374728.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3074N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559373.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK556e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0Q3GPL50.0A0A0Q3GPL5_BRADI; Uncharacterized protein
STRINGBRADI1G06970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-81NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]