PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g05346.1.p
Common NameBRADI_1g05346, LOC100835580
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 394aa    MW: 41954.5 Da    PI: 9.3122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g05346.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29321379259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver++ d  ++++tYe++Hnh 
  Bradi1g05346.1.p 321 ADNYSWRKYGQKPIKGSPHPRGYYRCSSIkDCPARKHVERCRGDAGMLIVTYENDHNHA 379
                       69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.2E-14283318IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-32310381IPR003657WRKY domain
PROSITE profilePS5081129.907315381IPR003657WRKY domain
SuperFamilySSF1182903.79E-26318381IPR003657WRKY domain
SMARTSM007743.2E-35320380IPR003657WRKY domain
PfamPF031061.0E-24322378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEGVEEANRA AVGSCKKLVA SLARSGGDPF RPTAGGAETD EAVAMFGKVV TILSNRVGHA  60
RARVGAGRKR SSPPLDPSCL LEYHPPPPNN GFRVHGHGSC TPAPPPPPPP VTSKDVLPAA  120
EVDYRAMFLE TPLLDLNGCT ATAPATATAS SSIVAMAAPV QQINTSKSPA VTTNPPPLPP  180
CATKIQFHQH LNQQQQQQQQ GKRVQFEQQQ KAAPGGGGGE KQQFHMEMAP RSKEPEVISF  240
SFDNNSACTS SASFFTSISS QLISMSDAAA APAPRTKAAG CGKKGEVDAD GRCHCPKKKK  300
PREKRVVRMP AISDKVADIP ADNYSWRKYG QKPIKGSPHP RGYYRCSSIK DCPARKHVER  360
CRGDAGMLIV TYENDHNHAQ PLDLSTLPSN SEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-193183811274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g05346.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700431e-119AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752047.10.0protein WRKY1
TrEMBLA0A0Q3N7P80.0A0A0Q3N7P8_BRADI; Uncharacterized protein
STRINGTraes_5BL_E294922A9.21e-123(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Representative plantOGRP1390644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-40WRKY DNA-binding protein 15