PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g04110.1.p | ||||||||
Common Name | BRADI_1g04110, LOC100841205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 32709.5 Da PI: 10.7214 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 90 | 138 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdp+ +r+r +lg+f+taeeAa+a++aa+ ++ g Bradi1g04110.1.p 90 YRGVRQRR-WGKFAAEIRDPN---QRRRLWLGTFDTAEEAAAAYDAAKIRISG 138 9****998.**********93...36**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-18 | 89 | 140 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.1E-26 | 89 | 162 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 89 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.259 | 89 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-13 | 90 | 138 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-15 | 90 | 121 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGPNPSLEML AAAAEEAAAV APPRGRVVRI LVHDSDATDS SSSEDEAPPS SSPKRQLGEA 60 AAAGRRRKKR RVMEAGRRDA ENWTRPAATY RGVRQRRWGK FAAEIRDPNQ RRRLWLGTFD 120 TAEEAAAAYD AAKIRISGNR VSKIRISGSS APANFPSAPC SPPRKSYKPI MLPPSPEPTK 180 LSPLPLKPAE PTIPPPPLPA LPFALPLKLR LKLSLHSQVK VEPDCFAGEV QQEGRSCAGK 240 VQEEVRNCGR KVKEEGDSHE VQAVKPMWAM INGKRKKRSG CGTRVRALHA TSVCVEEVGG 300 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 90 | 140 | 6 | 57 | ATERF1 |
3gcc_A | 2e-15 | 90 | 140 | 6 | 57 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 69 | RRRKKR |
2 | 64 | 70 | RRRKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g04110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356841 | 4e-39 | AK356841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040O03. | |||
GenBank | AK363180 | 4e-39 | AK363180.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013E23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563827.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | I1GLP4 | 0.0 | I1GLP4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G04110.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 9e-15 | cytokinin response factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g04110.1.p |
Entrez Gene | 100841205 |