PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03880.2.p
Common NameBRADI_1g03880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 433aa    MW: 47036.5 Da    PI: 8.2417
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03880.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-17117166155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bradi1g03880.2.p 117 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 166
                       78*******************......55************************998 PP

2AP236.71.1e-11209253149
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaa 49 
                       s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+aai++
  Bradi1g03880.2.p 209 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAAIRF 253
                       89********.7******...5...334336**********99*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-11117176No hitNo description
SuperFamilySSF541715.36E-16117175IPR016177DNA-binding domain
PfamPF008471.9E-9117166IPR001471AP2/ERF domain
PROSITE profilePS5103217.622118174IPR001471AP2/ERF domain
SMARTSM003801.0E-31118180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-17118175IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-11209264IPR016177DNA-binding domain
CDDcd000185.38E-20209265No hitNo description
PfamPF008471.3E-7209253IPR001471AP2/ERF domain
SMARTSM003801.9E-24210269IPR001471AP2/ERF domain
PROSITE profilePS5103210.586210263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-9210264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVLDLNVESP AGSGSSSSSV LNNSAGGDAA SGGGFRFGLL GSPADDEAFS SGFVTRQLFP  60
PPERGATPGM MMMTAPAPVP WQPRRAEDLG VAAAGQQQLA TPAVAKKTRR GPRSRSSQYR  120
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGLEAD INFNLSDYEE  180
DLKQMRNWTK EEFVHILRRQ STGFARGSSK YRGVTLHKCG RWEARMGQLL GKKYIYLGLF  240
DSEVEAARAA IRFNGREAVT NFESSSYNGD ALPDTETEAI VDADVLDLDL RMSQPNAHDS  300
KRDNIVAGLQ LTFDSPEPSS IMVSQPMSAS SQWPVHQHGT AVPPQQLHLY SSASPVFFPS  360
LQERPMERRP PESGGPVQPF PNWGWHQVPA GGSSRSPLLH AAASSGFSTA TGAAAQQLPP  420
FADHRFYFPP SA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03880.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6970000.0AB697000.1 Triticum aestivum Q mRNA for transcription factor WAP2AQ, complete cds.
GenBankAB6970020.0AB697002.1 Triticum aestivum q mRNA for transcription factor WAP2D, complete cds.
GenBankAY6459450.0AY645945.1 Triticum aestivum floral homeotic protein (Q) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559243.10.0floral homeotic protein APETALA 2
SwissprotQ84TB51e-170AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0Q3J3C00.0A0A0Q3J3C0_BRADI; Uncharacterized protein
STRINGBRADI1G03880.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.38e-84related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]