PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g03790.1.p | ||||||||
Common Name | BRADI_1g03790, LOC100838335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 19282.7 Da PI: 9.6054 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00094 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H +H Bradi1g03790.1.p 60 FVCKTCGRAFASFQALGGHRTSH 82 89*********999998888777 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H Bradi1g03790.1.p 121 HECHICGLGFEMGQALGGHMRRH 143 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.93E-7 | 60 | 82 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.8E-10 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.34 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.93E-7 | 116 | 143 | No hit | No description |
Pfam | PF13912 | 7.9E-11 | 120 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.49 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MAVKRERDQE EPAAAVSLAL SLSTDSSAAS TTTTESGGSP AAAKRQRSRS RRAAAAEGEF 60 VCKTCGRAFA SFQALGGHRT SHLRGRHGLE LGVGVARAIR EHQQRQRRKE VEEEQDKKQR 120 HECHICGLGF EMGQALGGHM RRHREEMMAG GADRWVDLAA VVAGSGAAGE PPVLLQLFV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 48 | KRQRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g03790.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU408224 | 7e-46 | EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559238.1 | 1e-125 | zinc finger protein ZAT9 | ||||
TrEMBL | I1GLK4 | 1e-124 | I1GLK4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G03790.1 | 1e-124 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 | Representative plant | OGRP13900 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 6e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g03790.1.p |
Entrez Gene | 100838335 |