PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g03780.1.p | ||||||||
Common Name | BRADI_1g03780, LOC100837855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 149aa MW: 15912.3 Da PI: 11.1439 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Bradi1g03780.1.p 107 HECHVCGAGFEMGQALGGHMRRH 129 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.24E-8 | 47 | 70 | No hit | No description |
Pfam | PF13912 | 6.1E-10 | 48 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.24E-8 | 102 | 129 | No hit | No description |
Pfam | PF13912 | 1.4E-11 | 107 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.37 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MKHMTRDFQS EVAAAVPLSL SLSLGAMAAE RKIKKLRHRT AGGAGESFVC KTCSRAFASF 60 QALGGHRTSH LRGRHGLALS LSGSPPPPPP RKSTEQKNSK PSQQQQHECH VCGAGFEMGQ 120 ALGGHMRRHR EEAAAQAQAP PVLLQLFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g03780.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563654.1 | 1e-103 | zinc finger protein ZAT8 | ||||
Swissprot | Q9LX85 | 8e-19 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | I1GLK3 | 1e-102 | I1GLK3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G03780.1 | 1e-102 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 | Representative plant | OGRP11904 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g03780.1.p |
Entrez Gene | 100837855 |