PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01990.3.p
Common NameBRADI_1g01990, LOC100836288
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 829aa    MW: 93965 Da    PI: 5.607
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01990.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.68.5e-1881165191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY++YA + GF v+++ks+ + + g + +  +vC+k+g+ +e+        + r++ +t+C+a+++ +++ dg  ++t+++leHnH+l+p
  Bradi1g01990.3.p  81 NFYKRYALRSGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVSLEHNHALNP 165
                       6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-1681165IPR004330FAR1 DNA binding domain
PfamPF105512.5E-25270361IPR018289MULE transposase domain
PROSITE profilePS509669.371549585IPR007527Zinc finger, SWIM-type
SMARTSM005750.0041560587IPR006564Zinc finger, PMZ-type
PfamPF044345.4E-5562581IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MEVDSAPVEE ELAFAAKQHE DDDDDGEDVS PGSKELVAMV EAAAESIELD VAADNRAAAP  60
DGDDRTPRDG MVFKSYEEVL NFYKRYALRS GFGVCVKKSS FTKAGLCRRL VLVCNKWGNG  120
KEDACYQARP TAKTNCQATV VARLWGDGLL HLTDVSLEHN HALNPSAARF LRCYKTLPSG  180
MSKDLVVRAA RGECLTSGGD TEVLMFDDWG RLKIREGDVQ AINGFFGEMQ AKQPNFFYVM  240
DFYVEGNLRS VLWADARSRE AYQYFSDAIW VDTSCLRKKF DVPLVLFLGV NHHGQLVLLG  300
CGLLSDESTE SFLWLFKSWL TCMKGQLPNA IITDECVAIK AAVREVFPKT RHRISDWHIV  360
RSISEKLGEL AEYESIKTEL EAVIYDSLKD DEFEARWKNL IDRFGLQDNE WIIFLYENRH  420
LWVPSFLKDA LWAGLSVNHR ENPGAFFDDS LSRETTLVSF LSSYMILVQN KHKMEQQDDF  480
ESLSSSRVLV SKFPMEEQLS KIYTLNMFVK FQDELKSTMQ CQVQLDGSTS SFVVIDLAEP  540
GREMVNKKYE VVHCMETNRM ECNCGLFQFS GIVCRHALSV LKWQQVYDIP PCYVLNRWRS  600
DFKQLHVLDN PLKDLVSSNH VERYDHITLQ CLRLVEIGMV SDEKYQHALK LISDMKRTLL  660
DDNLCRELEH KLSPSERAIA NGDSHAQPGS SEVGPSKKRR GRPPKKSKEI SMESVSNQYG  720
NKDSLLVSSD ASQKDAFHST STASNLGTHV RPHGVDDLME EVNPNELSFE SRYGVQSSHP  780
HHYGDQLHPG NTLQFGQQTP SAEQSRGVQW VYPNIFQDDQ APYGRRTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01990.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559160.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_010235331.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_024312384.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1GKZ20.0I1GKZ2_BRADI; Uncharacterized protein
STRINGBRADI1G01990.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-124FAR1-related sequence 6