PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g01990.1.p | ||||||||
Common Name | BRADI_1g01990, LOC100836288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 829aa MW: 93965 Da PI: 5.607 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.6 | 8.5e-18 | 81 | 165 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA + GF v+++ks+ + + g + + +vC+k+g+ +e+ + r++ +t+C+a+++ +++ dg ++t+++leHnH+l+p Bradi1g01990.1.p 81 NFYKRYALRSGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVSLEHNHALNP 165 6*****************9998.6777****************9999.....999*********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-16 | 81 | 165 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-25 | 270 | 361 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.371 | 549 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0041 | 560 | 587 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.4E-5 | 562 | 581 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 829 aa Download sequence Send to blast |
MEVDSAPVEE ELAFAAKQHE DDDDDGEDVS PGSKELVAMV EAAAESIELD VAADNRAAAP 60 DGDDRTPRDG MVFKSYEEVL NFYKRYALRS GFGVCVKKSS FTKAGLCRRL VLVCNKWGNG 120 KEDACYQARP TAKTNCQATV VARLWGDGLL HLTDVSLEHN HALNPSAARF LRCYKTLPSG 180 MSKDLVVRAA RGECLTSGGD TEVLMFDDWG RLKIREGDVQ AINGFFGEMQ AKQPNFFYVM 240 DFYVEGNLRS VLWADARSRE AYQYFSDAIW VDTSCLRKKF DVPLVLFLGV NHHGQLVLLG 300 CGLLSDESTE SFLWLFKSWL TCMKGQLPNA IITDECVAIK AAVREVFPKT RHRISDWHIV 360 RSISEKLGEL AEYESIKTEL EAVIYDSLKD DEFEARWKNL IDRFGLQDNE WIIFLYENRH 420 LWVPSFLKDA LWAGLSVNHR ENPGAFFDDS LSRETTLVSF LSSYMILVQN KHKMEQQDDF 480 ESLSSSRVLV SKFPMEEQLS KIYTLNMFVK FQDELKSTMQ CQVQLDGSTS SFVVIDLAEP 540 GREMVNKKYE VVHCMETNRM ECNCGLFQFS GIVCRHALSV LKWQQVYDIP PCYVLNRWRS 600 DFKQLHVLDN PLKDLVSSNH VERYDHITLQ CLRLVEIGMV SDEKYQHALK LISDMKRTLL 660 DDNLCRELEH KLSPSERAIA NGDSHAQPGS SEVGPSKKRR GRPPKKSKEI SMESVSNQYG 720 NKDSLLVSSD ASQKDAFHST STASNLGTHV RPHGVDDLME EVNPNELSFE SRYGVQSSHP 780 HHYGDQLHPG NTLQFGQQTP SAEQSRGVQW VYPNIFQDDQ APYGRRTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g01990.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559160.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_010235331.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_024312384.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | I1GKZ2 | 0.0 | I1GKZ2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G01990.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP13888 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-124 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g01990.1.p |
Entrez Gene | 100836288 |