PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00405.1
Common NameAMTR_s00405p00009920
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WOX
Protein Properties Length: 231aa    MW: 25707.5 Da    PI: 7.204
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00405.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-193393357
                                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                            +R+ +t+eq+++L el+++   r p+ae++++++++l    +++ ++V++WFqN++a+e++
  evm_27.model.AmTr_v1.0_scaffold00405.1 33 SRWIPTAEQIRILRELYYSngVRSPTAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 93
                                            7****************97568*************************************97 PP
2Wus_type_Homeobox111.35e-363195265
                       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                            +++RW Pt+eQi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  evm_27.model.AmTr_v1.0_scaffold00405.1 31 SNSRWIPTAEQIRILRELYYsNGVRSPTAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 95
                                            689***************9989*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-71293IPR009057Homeodomain-like
SuperFamilySSF466893.98E-122498IPR009057Homeodomain-like
PROSITE profilePS5007110.4462894IPR001356Homeobox domain
SMARTSM003891.4E-53098IPR001356Homeobox domain
PfamPF000466.1E-173393IPR001356Homeobox domain
CDDcd000861.24E-63495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDHSDNCPGN NNNSGSGSGS GTKSGYMCRQ SNSRWIPTAE QIRILRELYY SNGVRSPTAE  60
QIQRISARLR QYGKIEGKNV FYWFQNHKAR ERQKKRLTVD LAVQRAAATS GGLPPGVLNV  120
SHIAGSTCGS VLMESSLMDC CSTSALENHN GRKERANGDM IVERERSAPG KETLQLFPMH  180
HSPQNDDTIA DDYFFNDEEE KPVCMASLEL TLNSFDRVYH PDSDFRSHSS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8821454e-66FM882145.1 Amborella trichopoda partial wus gene for putative wuschel homeobox protein WUS.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624486.21e-175protein WUSCHEL isoform X1
SwissprotQ6YBV17e-51WUS_ANTMA; Protein WUSCHEL
TrEMBLW1PPC41e-173W1PPC4_AMBTC; Uncharacterized protein
STRINGERN090351e-174(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-39WOX family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]