PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00214.2
Common NameAMTR_s00214p00019140
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 223aa    MW: 25428.5 Da    PI: 4.7986
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00214.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-1821110199
                                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                                             ffkvl    +++++ l++p  f  ++ +  +e s+++ l+ +sg +W v l  +k+ g++++++GWk+Fv+
  evm_27.model.AmTr_v1.0_scaffold00214.2  21 FFKVL--LGNFSEQ-LSIPPAFR-TYlE--HEVSRKVFLKGPSGDVWPVDL--KKTVGGMLFQNGWKDFVN 83 
                                             67777..6666665.******96.7734..446789***************..****************** PP

                                             HHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                      B3  71 angLkegDfvvFkldgrsefelvvkvfrk 99 
                                             ++ L+ g f+vF++dg+  f  +v++f++
  evm_27.model.AmTr_v1.0_scaffold00214.2  84 DHCLQLGHFLVFRYDGDVYF--TVQIFDQ 110
                                             ***************98888..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-2315113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2317113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.97418111IPR003340B3 DNA binding domain
CDDcd100171.76E-2120109No hitNo description
PfamPF023629.2E-1721110IPR003340B3 DNA binding domain
SMARTSM010192.0E-1321111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLVDRGGGNG SRGSERDFYY FFKVLLGNFS EQLSIPPAFR TYLEHEVSRK VFLKGPSGDV  60
WPVDLKKTVG GMLFQNGWKD FVNDHCLQLG HFLVFRYDGD VYFTVQIFDQ TCCEKEDAFL  120
VHNSDEMDFN EDNAEEVKVK ENLMKQSRIA RNRSFKSKMN RTNGKVNIFP TQPVFDNGYV  180
EAEKNDMKTK MNDIMTVGDS SDESSCEEQC SEKGPLCQQG VE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011622043.11e-158B3 domain-containing protein Os01g0723500 isoform X2
TrEMBLW1P4A11e-165W1P4A1_AMBTC; Uncharacterized protein
STRINGERN024841e-165(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-19B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]