PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00166.28
Common NameAMTR_s00166p00052330, LOC18438701
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 501aa    MW: 56626.3 Da    PI: 6.6333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00166.28genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.43.9e-881284981374
                                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 
                                              l++lLl+ Ae ++++++ +a++lL      +sp g+p+qRl+ yft AL + l r  +++ ++ p+ +++
  evm_27.model.AmTr_v1.0_scaffold00166.28 128 LIHLLLSSAEKIEHKQFDRAKSLLMVCDFESSPVGNPVQRLVLYFTDALWEILER-ETGVKSQNPTITQE 196
                                              689***************************************************9.45555444443333 PP

                                     GRAS  71 ekn....sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                                              +++    s+    a  +f++v P++k+ ++ta qa+l+a+++++r+H iD+ +  G++W  L+q+La+R 
  evm_27.model.AmTr_v1.0_scaffold00166.28 197 NEDeesiSIGFHPAAMVFFQVVPFVKVLQFTAIQAMLDAMASSTRIHLIDLKVRTGMHWTVLMQSLAARL 266
                                              22233333333344466***************************************************** PP

                                     GRAS 137 egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
                                              + p   l+iT vg+    s++++ee g+rL  fA++l++pf fn++v++++ +   e+L ++ gE +aV 
  evm_27.model.AmTr_v1.0_scaffold00166.28 267 DHPVeLLKITMVGN----SRTRMEEAGNRLLGFAQTLKLPFVFNLVVVSDMGKEIREKLPMEDGEWVAVY 332
                                              6555499*******....9********************************9999*************** PP

                                     GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                                                + l ++l +++ le+    ++k++ sl+P+++v++e e +hns+sF++rf+e l y  a  dsl+a +
  evm_27.model.AmTr_v1.0_scaffold00166.28 333 APIVLSSMLVKPHYLEN----LVKVISSLRPDIMVITEVEGKHNSPSFVKRFTEVLFYNGAYCDSLDAFF 398
                                              *********99999999....************************************************* PP

                                     GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                                               +++ +r ++Er+++g  i+++v  eg er+ rh  +  W+  l++ GF++v+ls++a  qa+l+++++ 
  evm_27.model.AmTr_v1.0_scaffold00166.28 399 DSDDVNRLVIERVCMGTGIRSMVGREGGERKIRHVGVDVWKLFLKRLGFEEVELSQDALYQASLIVKNHR 468
                                              ********************************************************************** PP

                                     GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                d  ++e + ++l+ gWk+ pL svSaWr
  evm_27.model.AmTr_v1.0_scaffold00166.28 469 hADSCTLEMNGKALTVGWKGTPLHSVSAWR 498
                                              9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.833102477IPR005202Transcription factor GRAS
PfamPF035141.3E-85128498IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MKPEIPEVEE EGEGIGASRP HRNPQFSNYD NVQVEIPENK KAQRYPISLT ALEILKSYSS  60
LTKPLCNSTE IKEVTKLKNP TLRGRRLSTQ EVIRIAGEQY LYSGKNLSLQ FNPHLSNINN  120
EDINNIELIH LLLSSAEKIE HKQFDRAKSL LMVCDFESSP VGNPVQRLVL YFTDALWEIL  180
ERETGVKSQN PTITQENEDE ESISIGFHPA AMVFFQVVPF VKVLQFTAIQ AMLDAMASST  240
RIHLIDLKVR TGMHWTVLMQ SLAARLDHPV ELLKITMVGN SRTRMEEAGN RLLGFAQTLK  300
LPFVFNLVVV SDMGKEIREK LPMEDGEWVA VYAPIVLSSM LVKPHYLENL VKVISSLRPD  360
IMVITEVEGK HNSPSFVKRF TEVLFYNGAY CDSLDAFFDS DDVNRLVIER VCMGTGIRSM  420
VGREGGERKI RHVGVDVWKL FLKRLGFEEV ELSQDALYQA SLIVKNHRHA DSCTLEMNGK  480
ALTVGWKGTP LHSVSAWRCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3416149836375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020525783.10.0scarecrow-like protein 18
TrEMBLW1PTB50.0W1PTB5_AMBTC; Uncharacterized protein
STRINGERN105300.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2520734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-46RGA-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]