PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00160.12 | ||||||||
Common Name | AMTR_s00160p00054480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Dof | ||||||||
Protein Properties | Length: 210aa MW: 22840.3 Da PI: 5.2441 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 39.4 | 1.3e-12 | 44 | 79 | 25 | 60 |
zf-Dof 25 slsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++sqPr+ C++C r t+GG+lrnv +Gg + k+++ evm_27.model.AmTr_v1.0_scaffold00160.12 44 NMSQPRHSCRTCCRSLTNGGTLRNVQLGGNSCKRNR 79 89**************************97666544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-6 | 33 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-9 | 43 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEQEIGDAAY ILGSPSLFLQ DPEEKSRYKK APLECPGGDS FDTNMSQPRH SCRTCCRSLT 60 NGGTLRNVQL GGNSCKRNRP AEMTTNTTSA HIETIFSQPA PTIHSIAPSS GFGSSCYAFE 120 QVNGYDGSRD QQFMGSESLS HAVNFVGEFG SSFAKHCLPQ LGAGLNEMMQ HELTSGWCGE 180 RVLAWFDEGV MERGPSPDFG SLTHYFTYP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1PSZ9 | 1e-156 | W1PSZ9_AMBTC; Uncharacterized protein | ||||
STRING | ERN10979 | 1e-156 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38000.1 | 5e-10 | DNA binding with one finger 4.7 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00160.12 |
Publications ? help Back to Top | |||
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