PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00160.11 | ||||||||
Common Name | AMTR_s00160p00053540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Dof | ||||||||
Protein Properties | Length: 229aa MW: 25286.2 Da PI: 5.6585 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 97.5 | 9.3e-31 | 32 | 87 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 lkcprCds +tkf yynnys+ qPr++C++C r Wt+GG+lrnvPvG+++rk++k evm_27.model.AmTr_v1.0_scaffold00160.11 32 PLKCPRCDSFDTKFWYYNNYSILQPRHYCRTCCRSWTNGGTLRNVPVGSSSRKRNK 87 689*************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 24.689 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-27 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-18 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEQEIGDAAH LLRSSSLFLQ DPEEKSSYKK VPLKCPRCDS FDTKFWYYNN YSILQPRHYC 60 RTCCRSWTNG GTLRNVPVGS SSRKRNKPAE MTMNTTSAQL ETILSQPAPT TYSIAPPAGF 120 GSSFYSFEQG NGYDGTSDQG MLPQQFMGSE SQSHAMNFVG QFGSGFAEQG LPQLGAGLDG 180 MMQYEPTSGW RGERMPAWFD EGVIEKGPSP DSGSLTMPLP VTHYFTYP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1PSF6 | 1e-170 | W1PSF6_AMBTC; Uncharacterized protein | ||||
STRING | ERN10978 | 1e-171 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38000.1 | 8e-27 | DNA binding with one finger 4.7 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00160.11 |
Publications ? help Back to Top | |||
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