PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00160.10

Common Name

AMTR_s00160p00046100, LOC18439161

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Dof

Protein Properties

Length: 322aa MW: 34837.4 Da PI: 7.8741

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00160.10	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCk+C+ryWt+GG+lrnvPvGg++rknk+ + evm_27.model.AmTr_v1.0_scaffold00160.10 31 PDQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKTCKRYWTRGGTLRNVPVGGSSRKNKRIK 91 6899******************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.0E-34	32	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	32	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MVSSSSSSLM DHRHSQLQQQ TGGAGGLKPP PDQALKCPRC DSSNTKFCYY NNYSLSQPRH 60 FCKTCKRYWT RGGTLRNVPV GGSSRKNKRI KRGGPSSSTT SSENQSSGNN NIGSQSVDPP 120 TSSSPATDLA CTLQGSVGSN HPIFYVLPSS AADVNLGFPT SSSLTSGSEF LHLPQFSSLS 180 SYLQDHQVAS FNPAHQVQEA PLSLLPDLSR FSSPLIEGPM DAPWKQQQQK LSLSLKDGHG 240 HESLQFLFPF EEGSRRAESL RAGVKLEEDN ASRLGQMDWQ MPSANAFENG GNDPSPLYWN 300 QSTTTSWPDI SSYSSSVTPL I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006849396.2	0.0	dof zinc finger protein DOF3.6
TrEMBL	W1PLS4	0.0	W1PLS4_AMBTC; Uncharacterized protein
STRING	ERN10977	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	8e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00160.10
Entrez Gene	18439161

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]