PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00156.27
Common NameAMTR_s00156p00055010
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 415aa    MW: 46977 Da    PI: 9.0369
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00156.27genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.11.3e-0946125286
                                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekk 70 
                                              W++  + aL++  +e   +  +++l k++W++++  + +    e +  qCk kw  l+k y k+k+++++
  evm_27.model.AmTr_v1.0_scaffold00156.27  46 WPNTAIDALLDRFEEYCFNRPQAQLGKKHWDRIAMEVNRMcRTEYTGMQCKYKWHRLKKTYAKEKQRAGR 115
                                              99999*****99988888888899*************66516688***********************98 PP

                                 trihelix  71 rtsessstcpyfdqle 86 
                                                    s++++f ++e
  evm_27.model.AmTr_v1.0_scaffold00156.27 116 ------SKWAFFPHVE 125
                                              ......5799998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1146124No hitNo description
CDDcd001670.0026368103No hitNo description
SuperFamilySSF527991.41E-30255399IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019111.2E-14255272IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PfamPF031623.1E-49257402IPR004861Protein-tyrosine phosphatase, SIW14-like
Gene3DG3DSA:3.90.190.101.8E-28257400IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019111.2E-14292305IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019111.2E-14326340IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0035335Biological Processpeptidyl-tyrosine dephosphorylation
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MATHPDDSKA LVPFTPWRPP PTPSATGLAT CASAQPRARP LKEELWPNTA IDALLDRFEE  60
YCFNRPQAQL GKKHWDRIAM EVNRMCRTEY TGMQCKYKWH RLKKTYAKEK QRAGRSKWAF  120
FPHVELLVNK SSRAHMGEPN GDPDEHTPAS PLVPKTEPDG PGFEGGGKRR RGVARVLGQA  180
VEKGIGRVAE VVGDLERKRT DEMRRILDAQ LQVVTAMFQG LKEVREGASL APSLNHAMKD  240
WGLNPPQNDL CMGKLYPPIN FGMVDKRVYR SGFPNCRNFA FLETLHLNSI ICLCSEPYPE  300
ASIEFLSAHG IRLFHIASDF KGPMLLLPDT VREALRVLLD SRNHPILIHC KKGKRQTSCL  360
VGCLRRVQNW CFSSVFEEYE RYAGGKNHVS DLQFIEQFDV SNAREYCFSQ LPVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A2e-562554022151At1g05000
1xri_B2e-562554022151At1g05000
2q47_A2e-562554022151Probable tyrosine-protein phosphatase At1g05000
2q47_B2e-562554022151Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524286.10.0uncharacterized protein LOC18995747 isoform X2
TrEMBLW1PKW30.0W1PKW3_AMBTC; Uncharacterized protein
STRINGERN083060.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-10sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]