PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00153.11
Common NameAMTR_s00153p00031360, LOC18437110
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 563aa    MW: 63180.8 Da    PI: 4.5818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00153.11genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS130.22.3e-402304332221
                                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetse 71 
                                               +lL +  ea+++g+  la+ +++r+ e +sp g++m+R+ + +++ L+ + a++  ++     ++e+  
  evm_27.model.AmTr_v1.0_scaffold00153.11 230 LHLLKALGEAMEKGSRDLADVIISRIAEKVSPVGSTMERVCFNMVRTLEPTWAQK--QTDYL--VREA-- 293
                                              68999999*******************************************9992..22222..2222.. PP

                                     GRAS  72 knsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegpp 140
                                                +++ + al++f+e++P+ +f+h++aNqaI e++ +  ervHi+Dfdi+ GlQWp+Llq La  +++  
  evm_27.model.AmTr_v1.0_scaffold00153.11 294 --QKNYMVALRAFYEIFPYGRFAHFAANQAIIESIPQWaERVHIVDFDIGDGLQWPPLLQGLAH-SSKVR 360
                                              ..4567788999***********************9977************************9.67889 PP

                                     GRAS 141 slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvl 208
                                               + iT+v      + e+ +et++rL + Ae+++v++  +     +++++e++eL +++  gE ++Vn ++
  evm_27.model.AmTr_v1.0_scaffold00153.11 361 AVHITAVRT----EGERFRETKRRLCEWAEAVRVQLCVE-----ETSMVEVKELFMEEraGEWVVVNYMV 421
                                              *********....9******************9997555.....5899999999777777********** PP

                                     GRAS 209 qlhrlldesvsle 221
                                               l ++  ++ +le
  evm_27.model.AmTr_v1.0_scaffold00153.11 422 GLPHMG-SRRALE 433
                                              **9997.444444 PP
2GRAS25.91.2e-08505562319374
                                     GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                                              +e +G+  v lse  + +a+ l+r ++ s g +v  e+++++vl W++ pLv vSaWr
  evm_27.model.AmTr_v1.0_scaffold00153.11 505 FEFSGLIGVGLSEGSVVEARELVRACEgSYGVEVVgERRNEMVLKWRGTPLVRVSAWR 562
                                              66789999*******************77776665799*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.312203562IPR005202Transcription factor GRAS
PfamPF035148.1E-38230433IPR005202Transcription factor GRAS
PfamPF035144.1E-6505562IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNCLEYYAQT NFDAFETEYR PSYYFSEHGM DMSFLINNYH EYSDSTMEDS CDTSTKYISG  60
LSSDNHGFLQ SIAVPLNRHE FSESAMEDSF NSPTAYPSNQ YSNGYLENQY NDNHVFQSFI  120
TPFPDYPNSP IEIGYPESNT NFSETEISGS GLSESGKVSS ISLLKTSEVS SNGFSQSGEF  180
SDRVFLNTTE NSNNGLSESN KIQVFPDSEK QMILPWEAEE EAQDLQLSLL HLLKALGEAM  240
EKGSRDLADV IISRIAEKVS PVGSTMERVC FNMVRTLEPT WAQKQTDYLV REAQKNYMVA  300
LRAFYEIFPY GRFAHFAANQ AIIESIPQWA ERVHIVDFDI GDGLQWPPLL QGLAHSSKVR  360
AVHITAVRTE GERFRETKRR LCEWAEAVRV QLCVEETSMV EVKELFMEER AGEWVVVNYM  420
VGLPHMGSRR ALEKAHGLLQ ACGHVGLVTM GRGCVGEGGF DGCLLGLHGL LESMEWQLPK  480
QGLARTVFES LFFGNIGPIR PESDFEFSGL IGVGLSEGSV VEARELVRAC EGSYGVEVVG  540
ERRNEMVLKW RGTPLVRVSA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1324756221375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847398.10.0nodulation-signaling pathway 2 protein
TrEMBLW1PMF40.0W1PMF4_AMBTC; Uncharacterized protein
STRINGERN089790.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.19e-20GRAS family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]