PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00133.5 | ||||||||
Common Name | AMTR_s00133p00027110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27347.7 Da PI: 6.6883 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.5e-11 | 161 | 208 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq evm_27.model.AmTr_v1.0_scaffold00133.5 161 SHSIAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 208 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.94E-18 | 155 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.16E-9 | 155 | 212 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-18 | 157 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.815 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-8 | 161 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDPQQMMSES SSYNLGEIWP FSVNNIGDLN NGGFLQRSPH FPFGEMSNRG DVSVSVEESS 60 VTEQSGGEPP HSRKKRREAA VLDDESSKLV STSSGGDPLQ TGSEGMRLKA LTGSRENSVD 120 LKGEAEASAG NNQDEHKIQP VEPPKQDYIH VRARRGQATD SHSIAERARR EKISERMKIL 180 QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRMSSGIE GFPAKDFQCL 240 KKKLFVR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011622770.1 | 1e-174 | transcription factor bHLH79 isoform X1 | ||||
Swissprot | Q0JXE7 | 7e-64 | BPE_ARATH; Transcription factor BPE | ||||
TrEMBL | W1P9P1 | 0.0 | W1P9P1_AMBTC; Uncharacterized protein | ||||
STRING | ERN04404 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 3e-66 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00133.5 |
Publications ? help Back to Top | |||
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