PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00125.16
Common NameAMTR_s00125p00070010, LOC18425456
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GeBP
Protein Properties Length: 420aa    MW: 46966.5 Da    PI: 8.1898
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00125.16genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57376.83.6e-24172268297
                                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk..sqlveKirrLKkKfkkkv 69 
                                              lfqr+w  + ei lL+G++d+ +k   +  +d  a+yefv+k ++++ +k  sq+veK++rL+kKfk+  
  evm_27.model.AmTr_v1.0_scaffold00125.16 172 LFQRIWKVDEEIDLLKGFLDYSKKYP-KGLQDHAAIYEFVQKWLNSESNKsqSQVVEKLKRLRKKFKNTF 240
                                              79*******************76665.6799************99887652268**************** PP

                                   DUF573  70 kkaksgkepsfskehdqkifelskkiWg 97 
                                              +k + gke++f+++++q+++++skkiWg
  evm_27.model.AmTr_v1.0_scaffold00125.16 241 AKEEAGKEVNFKTPEEQDVYQISKKIWG 268
                                              ***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-25173268IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAPKRKPSAS SSESSSSSSE QEDKSHYERK PAVHPPESPT SENEESEEGE EETVRESDEQ  60
GEEDDNDEES ESEGVKTKPP TKARSSTTRS SSKDKGNPAN PPASHSVKPL GSKPMDIPLV  120
TDSPKSRATK SIKSPPPPSK RSEPMKSRKD DSKDLKKRKL SEVNAEGGGK QLFQRIWKVD  180
EEIDLLKGFL DYSKKYPKGL QDHAAIYEFV QKWLNSESNK SQSQVVEKLK RLRKKFKNTF  240
AKEEAGKEVN FKTPEEQDVY QISKKIWGCE NTKEEAEFEE NDSQKPNPSP VSNAKTRRIS  300
KANAVKKECV QNHVEGGKVP ESMDPGSTLV GEWIQSGPSP HSHPGFVPGF GGLGFVGGEG  360
LAKRVLGSME KSKVRMLEEK WRRQQMLEMD AYLKRVELVH EQTKLMVETL KSMNAYVYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158KDLKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830067.10.0probable transcription factor At5g28040
RefseqXP_020517684.10.0probable transcription factor At5g28040
RefseqXP_020517685.10.0probable transcription factor At5g28040
TrEMBLW1NQ080.0W1NQ08_AMBTC; Uncharacterized protein
STRINGERM974830.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-22DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]