PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00119.54 | ||||||||
Common Name | AMTR_s00119p00074870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 155aa MW: 17055.1 Da PI: 9.587 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.6 | 3.4e-29 | 87 | 141 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrYkeC+kNhAas+Gg++vDGC+Ef++ geegtaaal+CaAC CHRnFH+re++ evm_27.model.AmTr_v1.0_scaffold00119.54 87 LVRYKECRKNHAASVGGYSVDGCREFLAG-GEEGTAAALTCAACSCHRNFHKREED 141 69**************************8.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-11 | 79 | 149 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.9E-29 | 88 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-24 | 89 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.064 | 90 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MKVGSSTYYK IRAWLLFCSF FPHMPSSSTS TNTQFQKKSK NTGTQAFEDQ QQALESRTNS 60 TSTMRPQEAP KSTSQEPMRI SNGNKKLVRY KECRKNHAAS VGGYSVDGCR EFLAGGEEGT 120 AAALTCAACS CHRNFHKREE DGVCQCSSKS TSKR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931461.2 | 3e-33 | mini zinc finger protein 2 | ||||
Refseq | XP_020254212.1 | 4e-33 | mini zinc finger protein 2-like | ||||
TrEMBL | W1NNC4 | 1e-111 | W1NNC4_AMBTC; Uncharacterized protein | ||||
STRING | ERM97227 | 1e-112 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 2e-16 | mini zinc finger 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00119.54 |
Publications ? help Back to Top | |||
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