PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00114.41

Common Name

AMTR_s00114p00100630

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C2H2

Protein Properties

Length: 183aa MW: 20592.3 Da PI: 5.371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00114.41	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	165	181	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C+ C+k+F+r n++ evm_27.model.AmTr_v1.0_scaffold00114.41 165 FSCSVCNKTFNRYNNMQ 181 89*********988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.2E-4	165	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MGMKKNQADG FGLCYQVPTF TEWLKPSGVE SQAISTVHSS SSSSSYDFHC LQIPLSYQYQ 60 QEKKMKCLPL ISEFPESRSV KEEVVDAVLE RERFDFGKEE RDKVTVALQI GLPNSGPSSS 120 SLTDLKDEFS KEKKGVDREE REVLISEGKF WIPTPAQILI GPTQFSCSVC NKTFNRYNNM 180 QV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006836068.2	1e-130	zinc finger protein WIP6
TrEMBL	W1NPV4	1e-132	W1NPV4_AMBTC; Uncharacterized protein
STRING	ERM98921	1e-133	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	3e-20	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00114.41

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]