PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00111.43
Common NameAMTR_s00111p00072510
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 289aa    MW: 32669.6 Da    PI: 7.0356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00111.43genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.67e-14954146
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                             +g+W +eEde+l+++v+ +G+++W++I ++  + Rt+k+c++rw +
  evm_27.model.AmTr_v1.0_scaffold00111.43  9 KGPWMPEEDEILLEYVRHHGPRDWSAIRSKGLLPRTGKSCRLRWVN 54
                                             79*************************8876677**********87 PP
2Myb_DNA-binding45.81.4e-1465105345
                                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                              ++++eE+ + +++ +++G++ W++Ia +++ gRt++++k++w 
  evm_27.model.AmTr_v1.0_scaffold00111.43  65 KFSPEEERIVIELQAKFGNK-WARIATYLP-GRTDNDVKNFWS 105
                                              79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.769156IPR017930Myb domain
SuperFamilySSF466894.0E-287104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-20757IPR009057Homeodomain-like
SMARTSM007175.0E-12858IPR001005SANT/Myb domain
PfamPF002491.4E-12954IPR001005SANT/Myb domain
CDDcd001671.89E-121156No hitNo description
PROSITE profilePS5129421.71257112IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-1958110IPR009057Homeodomain-like
SMARTSM007171.8E-1362110IPR001005SANT/Myb domain
PfamPF002491.7E-1365105IPR001005SANT/Myb domain
CDDcd001676.00E-1265104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MIDAGAMRKG PWMPEEDEIL LEYVRHHGPR DWSAIRSKGL LPRTGKSCRL RWVNKLKPDL  60
KTGCKFSPEE ERIVIELQAK FGNKWARIAT YLPGRTDNDV KNFWSTRQKR LARTLQVAAP  120
LPPPPPPCKA LRPLIGSSEP AAKAPVFEDF VTFQNPTVIN TASSDQISLC RPNPLTPFSQ  180
VIPTPQLPDL VRENLPILKR KPSLHELRPK TELQIQEPPL DLHLLPANSN PIPFFAEENF  240
TGLPGHEFRQ EIRGDEDFLA TPDGFFDDFP VDMFDLIEPL PPPTSPNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-26711025126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837324.30.0transcription factor MYB39
SwissprotQ0JB893e-65MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLW1NX130.0W1NX13_AMBTC; Uncharacterized protein
STRINGERN001780.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-61MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]