PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00103.67 | ||||||||
Common Name | AMTR_s00103p00113520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 312aa MW: 34393.9 Da PI: 7.6976 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 283 | 305 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C + F+++ +L+ H + H evm_27.model.AmTr_v1.0_scaffold00103.67 283 VCPKCQRGFRDPVLLVEHVEKdH 305 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 2.49E-13 | 6 | 62 | No hit | No description |
PROSITE profile | PS51039 | 7.416 | 22 | 71 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 9.5E-10 | 23 | 61 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0086 | 25 | 64 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.9E-11 | 25 | 63 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.3E-10 | 103 | 158 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 9.42E-10 | 105 | 155 | No hit | No description |
PROSITE profile | PS51039 | 7.809 | 110 | 163 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.041 | 113 | 154 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.0E-8 | 113 | 153 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.26 | 248 | 271 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 248 | 276 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 250 | 271 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 10 | 282 | 305 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 284 | 305 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MLTLTNFLDD LAMGTPEFPN LGRHCSVDDC RLIDFLPFTC DRCDQVLCLE HRSYSKHHCS 60 GPNKDDVTVL VCPLCAKGVR LDPEEDPNIT WESHVRTDCD PSNYQKATKK PRCPVPGCKE 120 TLVFSNTIRC KDCNRDHCLK HRFGLDHKCP GPKKPEPSFS FSGFLRGQKN EPSGPKWAWK 180 TETTGSRRAQ PQVPWGPSLL SAASSMRASA ESSFAKLSIA TSEALQKAKE GAMASWEAKG 240 QGSGALAEKC RQCGAQFGDV ADLINHVERV HEGPMNNGEA IDVCPKCQRG FRDPVLLVEH 300 VEKDHRGSSR S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011621428.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Refseq | XP_011621429.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Refseq | XP_020519749.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Refseq | XP_020519750.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Swissprot | Q0D5B9 | 1e-120 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | W1P1N8 | 0.0 | W1P1N8_AMBTC; Uncharacterized protein | ||||
STRING | ERN00865 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1909 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-104 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00103.67 |
Publications ? help Back to Top | |||
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