PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00103.118
Common NameAMTR_s00103p00162010
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 726aa    MW: 78318.8 Da    PI: 6.4146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00103.118genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.6e-06329349526
                                               --SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                               +C++f++ G C++ d C +aHg
  evm_27.model.AmTr_v1.0_scaffold00103.118 329 PCPDFRK-GACRRADLCEYAHG 349
                                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.11E-1328183IPR020683Ankyrin repeat-containing domain
CDDcd002041.62E-1235176No hitNo description
Gene3DG3DSA:1.25.40.202.7E-1335194IPR020683Ankyrin repeat-containing domain
SMARTSM0024821003665IPR002110Ankyrin repeat
SMARTSM002483583113IPR002110Ankyrin repeat
PROSITE profilePS5029714.716136200IPR020683Ankyrin repeat-containing domain
SMARTSM002482.6E-4136168IPR002110Ankyrin repeat
PROSITE profilePS5008813.678136171IPR002110Ankyrin repeat
PfamPF000232.1E-6139170IPR002110Ankyrin repeat
SMARTSM003561.6E-4324350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.873329351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4357387IPR000571Zinc finger, CCCH-type
SMARTSM0035667359382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MCSGPEHQKP NSNNSSSMEK INNDVCNGNP SLTEEDSFSP LLELAANNDI EGFKKAMQND  60
PTLIDGVGVW YCRQNGSNQM VLEQRTPLMV ASMYGSLEVL AHILSVFSET CGNLHSGENQ  120
ATRKQYSGVN RACGPDKSTP LHCAAFGGSV NATEVVRLLL QAGADLDALD SHGRRPHDVI  180
VTSPKLSHIR LALEELLSSG EKPSGKLDGK PDGEINVSVS VSSSPPLSSS PDGSSPRSND  240
SSSVSSPKFL PDSAHFSGNF SEKKEYPVDP SLPDIKNSIY TTDEFRMYSF KVRPCSRAYS  300
HDWTECPFVH PGENARRRDP RKYHYSCVPC PDFRKGACRR ADLCEYAHGV FECWLHPAQY  360
RTRLCKDGTS CMRRVCFFAH TTEELRPLYM STGSAVPSPR STADVQGLMP GSPSSVNIGS  420
PFGSPGGLGH TSLAWPQPSV PTLHLPVSSG LQSSRLRSSL SARDMPMDEF EQAQQQLLGE  480
LACLPLQQQR SATAAQQPRP LRCKTLTPSN LDELFASELG SPRYAEAYAP LSPQIQSQKA  540
AAVSAFNQNM LNLPPINTSV YQQKSMDQAS LLQASFVLGS PSRMSPRGVE ALISPLGSRV  600
AALAKQQQQQ QQQQAGGVEE PEFPGPGRSC GRCGGLTGGL RLCLGRSNSF DLANKINDSG  660
LDEPDVSWVQ SLVKESPPEL KDKTGSASVA QGDGSAHGAP PPLESMDHSM LGAWLEQMQL  720
DQLVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519747.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLW1P0210.0W1P021_AMBTC; Uncharacterized protein
STRINGERN009160.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-173CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]