PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00101.96
Common NameAMTR_s00101p00121930, LOC18427122
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 773aa    MW: 83938.8 Da    PI: 6.5746
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00101.96genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.1e-11261319159
                                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                                              e+e k+  r+++NRe+A+ sRqRKk +++eLe+kv ++ +   +L ++l+  + e  +l
  evm_27.model.AmTr_v1.0_scaffold00101.96 261 EEEEKKKARLMRNRESAQLSRQRKKHYVDELEDKVRAMHSTIAELNSRLSFATAENMNL 319
                                              68899***********************************9999999988666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001704.7E-10261322IPR004827Basic-leucine zipper domain
SMARTSM003381.5E-14261325IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3263326IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.2E-15265324No hitNo description
SuperFamilySSF579592.65E-11265323No hitNo description
CDDcd147048.54E-21266317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAAMEDHWVT GDPPPHYLPS DFEALQIPPL DPAYTDGLFN DMDFPQTLMD GIEFSDDDLN  60
FDLDDILLPS SPGSGNNSGV LPDSGQNCQS LMNSGDSGYL SNGDSSINIE VQGSQIPASL  120
SSDHTNGDPE VDSSGSVLAS CDPSIQSVTN SETATFFPEI RVCTDNKNQL LIDSGNTSSM  180
TGFCGTRDPG VLGSESPQSL QCSQVSADYK DRPSPDSGHG SSSMNFGDTF TSGLSKSEPL  240
VSFQGKRKKA REDGSPSSNN EEEEKKKARL MRNRESAQLS RQRKKHYVDE LEDKVRAMHS  300
TIAELNSRLS FATAENMNLR HQLIALSPTS NAYAQPSSLP SHFPWVPCSS YAMNPQNGLG  360
FPPGSQVPLL PIPRLRTQQT VSSSKGRKSS KVNGKDGDGS KPSKRIKKVA SVSFLGFFLF  420
LLFFGGLIPV LDFRHGKISD QGVPPKGRVL IIRDHVNTSD KREVIDLVNG DFGKENWDYA  480
KHKRDGYRDS GMEAKQKERG SHSLPFSDTK GSVRPDNASE PMVASLYVPR NDKLVKIDGN  540
LILHAVLASE KAVASSAGRE SEKQTMAPDG EALRNGLTIA SAMTPAIPAA SNAALYRETL  600
RRRARSSTSR NAYLENQKAS SIDGPLQEWF LEGLTGPTLS SGMCTEVFQF EVNTTIIPKT  660
PSSKARNSSE NSLSKNRRFL YHDAIPLPGK TVLNETGESW GKREKGEERE IKPGMVVSVL  720
VDPREANDDS VGPPSKRLGR VFVVVLIDSI KYVTYSCVVP GPKGSKPHLV TR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1599605LRRRARS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836241.10.0bZIP transcription factor 17
TrEMBLW1NWN00.0W1NWN0_AMBTC; Uncharacterized protein
STRINGERM990940.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21711628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-86bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]