PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00095.75
Common NameAMTR_s00095p00122180
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 654aa    MW: 74345.4 Da    PI: 7.5854
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00095.75genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08454494239
                                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
                          Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                                              ++W++eE ell ++ +++++g   +W+ I++++g+gR+  +
  evm_27.model.AmTr_v1.0_scaffold00095.75 454 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVDE 494
                                              69**********************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.62E-2072166IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.2E-2083189IPR001623DnaJ domain
SMARTSM002715.7E-1487162IPR001623DnaJ domain
PROSITE profilePS5007618.13688170IPR001623DnaJ domain
PfamPF002263.2E-1788167IPR001623DnaJ domain
CDDcd062577.09E-1388159IPR001623DnaJ domain
PRINTSPR006252.2E-6111126IPR001623DnaJ domain
PRINTSPR006252.2E-6142162IPR001623DnaJ domain
PROSITE patternPS006360147166IPR018253DnaJ domain, conserved site
PROSITE profilePS512936.978451506IPR017884SANT domain
SMARTSM007172.2E-6452505IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-5454495IPR009057Homeodomain-like
SuperFamilySSF466899.72E-8454497IPR009057Homeodomain-like
PfamPF002495.3E-7454495IPR001005SANT/Myb domain
CDDcd001673.58E-5455495No hitNo description
PROSITE profilePS512938.456592647IPR017884SANT domain
SMARTSM007171.5E-6593645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-5594639IPR009057Homeodomain-like
SuperFamilySSF466895.38E-9595650IPR009057Homeodomain-like
CDDcd001671.36E-4596639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MPLISYSPEI INGEPIFFSS NCLPVKATNF EPAGLSFHYA ALKMVGLGEE EDVDSDDQSV  60
TDDRSKDYMP SSDSYKSKGK KKAGDQQDHY ALLGLGHLRF LATEEQIRRS YRETALKHHP  120
DKQAALLLAE ESEEAKQAKM DEIENHFKAI QEAYEVLIDP VKRRIYDSTD EFDDEIPSEC  180
APQDFFKVFG PVFMRNGRWS VTQSVPSLGD DNTPLGEVDS FYDFWFGFKS WREFPHADEF  240
DLDQAESRDH KRWMERQNAK LGERARKEEH TRIRTFVENA YKKDPRILRR REEEKAEKQK  300
KKEAKFLARK MKEEEAVRAA EEARKRKEEE EKQAAEAALN QKKQKEKEKK LLRKERTRLR  360
TLSAEVVSKN LLGLSASDVE GMCMKFETEQ LRGLCDNIEQ KEVSEKAQLL KDALQGKSAD  420
ESKVDQKNSL QNGSSSDSID NKGNILSGYE KREKPWSKEE IELLRKGMQK YPKGTSRRWE  480
VISEYIGTGR SVDEILKATK TVLLQKPDSA KAFDSFLEKR KPVQSIVSPL SSRDETKDAS  540
VNGVENNGPV GVPQKTESEK SLTSGSNQKK PETENPSGPA AQSVSNGAPS GSDQDSWTPT  600
QERALIRALK TFPKETSQRW ERVTAAVPGK TKIQCMKKFA ILKESFRNKK SAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1717728713123Zuotin
5dje_B1e-1717728713123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323344RKRKEEEEKQAAEAALNQKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020518050.10.0dnaJ homolog subfamily C member 2
TrEMBLW1NT700.0W1NT70_AMBTC; Uncharacterized protein
STRINGERM981750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]