PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00095.13
Common NameAMTR_s00095p00032720
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 345aa    MW: 38088.2 Da    PI: 7.4994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00095.13genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-05161185123
                                              EEET..TTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                              +kC    C+k+F+++ +Lk H +tH
  evm_27.model.AmTr_v1.0_scaffold00095.13 161 FKCLhsGCDKTFKNPQTLKMHHKTH 185
                                              789999******************9 PP
2zf-C2H215.93.7e-05215233220
                                              EETTTTEEESSHHHHHHHH CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                                              +Cp+Cg+ F   ++L+rH 
  evm_27.model.AmTr_v1.0_scaffold00095.13 215 RCPICGRAFVGLYELRRHF 233
                                              8*****************6 PP
3zf-C2H211.20.0012244266123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              + C++Cgk F    +L+ H +++
  evm_27.model.AmTr_v1.0_scaffold00095.13 244 HNCKKCGKKFYIEVDLRDHEKLC 266
                                              67*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-7157187No hitNo description
Gene3DG3DSA:3.30.160.606.9E-9159189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97161190IPR007087Zinc finger, C2H2
SMARTSM003550.0026161185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-4213249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.63E-8213264No hitNo description
PROSITE profilePS501579.058214242IPR007087Zinc finger, C2H2
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
SMARTSM003550.051214237IPR015880Zinc finger, C2H2-like
PfamPF138940.0012215237No hitNo description
PROSITE profilePS501578.621244265IPR007087Zinc finger, C2H2
SMARTSM0035548244264IPR015880Zinc finger, C2H2-like
SMARTSM00355130270291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDHSEEIPLH VSSLVHCESN GEFNAMALSD DLSYIMPGSS AAIDFCNLGF GYNGGFQVSP  60
LPMACNSASY FEDLDFLETH LDIKANSGNE VETQETLSGN GNVSCNGLPD IFHGSSKKPQ  120
IKKGHENMDK LSKKDWVFGD DHNGYNIATV SVDLIRNRRP FKCLHSGCDK TFKNPQTLKM  180
HHKTHYSDEV IASQLSSKLT SQASKAGQNK KVPCRCPICG RAFVGLYELR RHFGRKHSEG  240
EKMHNCKKCG KKFYIEVDLR DHEKLCGEPV ECKCGMKFAF KCNLLAHKRT HPDCLEPSVR  300
EEAGSGLVMA SSNIAALGMK VEELCGIASG HFRTNILTNG TYMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A7e-1115929148184Aart
2i13_B7e-1115929148184Aart
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271936.18e-90PREDICTED: zinc finger protein 567-like
TrEMBLW1NRE30.0W1NRE3_AMBTC; Uncharacterized protein
STRINGERM981130.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1095648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.14e-14C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]