PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00082.40
Common NameAMTR_s00082p00169320, LOC18426788
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GeBP
Protein Properties Length: 410aa    MW: 45914.8 Da    PI: 6.5362
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00082.40genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57377.72e-24179274397
                                   DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk..sqlveKirrLKkKfkkkvk 70 
                                              ++r+w+   ei lL+G++d+ +k   +  +d  a+yefv+ks++++ +k  +q++eK+rrL+ K++++  
  evm_27.model.AmTr_v1.0_scaffold00082.40 179 VHRIWNVAEEIDLLKGFLDYSKKYP-NGLQDHAAIYEFVQKSLNSDGNKsqTQVSEKLRRLRYKYQNNLG 247
                                              68******************65555.999****************976611679**************** PP

                                   DUF573  71 kaksgkepsfskehdqkifelskkiWg 97 
                                              + + gk+++f+++++q+++e+skkiW 
  evm_27.model.AmTr_v1.0_scaffold00082.40 248 REEAGKDVTFRTPEEQEAYEISKKIWA 274
                                              **************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-25180273IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAPKTKSSSS SSSESSCSSS EQDDKLQYES KPTVRRAESA PSEDEESGEG KEESEEEGDN  60
EEDSESEGEK AKPPTKAHSS SKIKDDEESE SEGEKAKPPT KARSSTTRSS FKDKDKGNSG  120
NLPTSYSAKP GSKPTDSPKS RPTKPPPSKR SEPTKSGQDD HKKRKLSEVN PEGGGRHLVH  180
RIWNVAEEID LLKGFLDYSK KYPNGLQDHA AIYEFVQKSL NSDGNKSQTQ VSEKLRRLRY  240
KYQNNLGREE AGKDVTFRTP EEQEAYEISK KIWADLKTRE DAEFEENNSQ NPVSHTKMRH  300
NSKAKAVKKE NVQNHVEGCK VPELMDLDLR LVSEWVHPGF MLEFGGLGFV GGQGLAKRVL  360
GSMDKSKLKT LEEKWRKQQM LEMDAYLKRV ELVHEQTKLM VETLESMGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006833491.10.0probable transcription factor At1g11510
RefseqXP_011620625.10.0probable transcription factor At1g11510
TrEMBLW1NVS20.0W1NVS2_AMBTC; Uncharacterized protein
STRINGERM987690.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-20DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]