PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00077.93 | ||||||||
Common Name | AMTR_s00077p00108560, LOC18432339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C3H | ||||||||
Protein Properties | Length: 323aa MW: 36885.1 Da PI: 6.9269 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.4e-12 | 185 | 210 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C +Gd CkF+H+ evm_27.model.AmTr_v1.0_scaffold00077.93 185 YQPDICKDYKETGYCGFGDACKFMHD 210 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.76E-9 | 183 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-7 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 185 | 210 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-11 | 185 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.0E-11 | 252 | 310 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 5.08E-12 | 262 | 305 | No hit | No description |
Pfam | PF13920 | 1.6E-7 | 262 | 303 | No hit | No description |
CDD | cd00162 | 1.86E-6 | 263 | 304 | No hit | No description |
SMART | SM00184 | 8.4E-4 | 263 | 300 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.188 | 263 | 301 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 278 | 287 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MADSSDPMPT EPVCSFFRKP TKNKNIRKRN LEENDSEGED ESPSVSLNHK VPKKPDNKLF 60 FSTVGPSRVP SETLEQAPSS KATVFHFESS KEIQVEHDSR ATATLETETD FSNDARAIRE 120 RILKQEEERL RGNKRDEKLY QGIHGYTDYK AGFRREHTVA SEKAGGAHGP LRAPVNYRAS 180 ARFDYQPDIC KDYKETGYCG FGDACKFMHD RGDYKSGWQM EREWEEAEKE RKRRLAMGGG 240 DDETGGRDGH ESDDEDDSLP FACFICRERF KEPVVTKCKH YFCACCAIEH HKKNKKCFVC 300 DKPTLGIFNT AHEIKKKMAE EK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 2e-64 | 98 | 318 | 113 | 317 | RING finger protein 113A |
5z58_M | 2e-64 | 98 | 318 | 113 | 317 | RING finger protein 113A |
6ff4_t | 2e-64 | 98 | 318 | 113 | 317 | RING finger protein 113A |
6ff7_t | 2e-64 | 98 | 318 | 113 | 317 | RING finger protein 113A |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 229 | 234 | ERKRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011622668.1 | 0.0 | zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 1e-146 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | W1P9C4 | 0.0 | W1P9C4_AMBTC; Uncharacterized protein | ||||
STRING | ERN04186 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5896 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-137 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00077.93 |
Entrez Gene | 18432339 |
Publications ? help Back to Top | |||
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