PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00077.154

Common Name

AMTR_s00077p00151100, LOC18432402

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Protein Properties

Length: 288aa MW: 33014.4 Da PI: 10.0477

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.154	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.5	1.2e-18	129	217	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 f+k +++s+v++ +l lp kf++ h ++++ t++led +g ++e ++ ++++ l++GWk+F+ evm_27.model.AmTr_v1.0_scaffold00077.154 129 FVKPMVRSHVSSCFWLGLPSKFCRGHL--PRKDSTMILEDGDGLEFETNY--IASREG--LSGGWKGFA 191 89*******************9995..345569***********..555555..9**** PP HHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 70 kangLkegDfvvFkldgrsefelvvkvf 97 +++L++gD +vF+l++ ++f +v ++ evm_27.model.AmTr_v1.0_scaffold00077.154 192 VDHKLDDGDALVFELIEPTKF--KVYII 217 *************987777..77766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.2E-22	121	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.49E-24	123	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.73E-26	127	218	No hit	No description
Pfam	PF02362	1.8E-17	129	217	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.478	129	220	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-22	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGMNSYEELR NQRLQENLKR FKDLGLQSVS LDLSEASKSE TKTIQRTVKP RSKGSDEEFM 60 ILRRSSRASK NPVPVYHEVG TILPRYRMRF ARKSSRGGDI RYASDEERIY AFKKAEKLQS 120 NLKSGHPSFV KPMVRSHVSS CFWLGLPSKF CRGHLPRKDS TMILEDGDGL EFETNYIASR 180 EGLSGGWKGF AVDHKLDDGD ALVFELIEPT KFKVYIIKVS EYNNEEKEKP TGSTKKTKCE 240 SRKKYNWTDN DNVYSFETEV TRETQSAQRA ERAAKRRCAT SLQKIIP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006842572.1	0.0	B3 domain-containing protein Os05g0481400
Swissprot	Q5KQI4	1e-62	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	W1P328	0.0	W1P328_AMBTC; Uncharacterized protein
STRING	ERN04247	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-59	B3 family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00077.154
Entrez Gene	18432402

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]