PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00077.139 | ||||||||
Common Name | AMTR_s00077p00141890, LOC18432386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 36728.9 Da PI: 9.2148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 7.1e-19 | 163 | 212 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++GVr++ +grW+AeIrd + r r++lg+++taeeAa+ ++aa+ +l+g+ evm_27.model.AmTr_v1.0_scaffold00077.139 163 FRGVRRRQ-WGRWAAEIRDpF-----RrVRVWLGTYDTAEEAAAVYDAAAVRLNGH 212 8****887.**********66.....45*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.0E-31 | 162 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-27 | 162 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.879 | 162 | 219 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-20 | 162 | 219 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.28E-16 | 163 | 218 | No hit | No description |
Pfam | PF00847 | 1.7E-11 | 163 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 163 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 185 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MATIKYSEHK VTCRKTFSGH CFPIKNRDPG RLSTEKLKVV RVVFTDTDAT DSSSDEDEDH 60 LLSFRRTRVK RHVHEITIQR SPIDRLETAL NRHESNHETA VRPEDSQKTA LDGETLPQNR 120 GTGRENRRKT AAGREAGWPH MRKTALGREN GRKTGEVGRR TAFRGVRRRQ WGRWAAEIRD 180 PFRRVRVWLG TYDTAEEAAA VYDAAAVRLN GHKAVTNFCK RTENQNKPVS VKLQGSPNRF 240 PLDNGGFRSV SSPTSVLLNG EYLTPPRQWG GEGMECLGLG DGVIDPFGIG ALALDGVSNA 300 VSFGGNGSEF ADDFGELGWD DFFVDIGEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 163 | 224 | 6 | 68 | ATERF1 |
3gcc_A | 4e-15 | 163 | 224 | 6 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006842557.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Refseq | XP_020521684.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | W1P317 | 0.0 | W1P317_AMBTC; Uncharacterized protein | ||||
STRING | ERN04232 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-09 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00077.139 |
Entrez Gene | 18432386 |
Publications ? help Back to Top | |||
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