PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.41
Common NameAMTR_s00069p00068180, LOC18447696
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 327aa    MW: 35836.1 Da    PI: 4.7065
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.41genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.3e-36251162102
                                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
                             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 
                                              Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++  
  evm_27.model.AmTr_v1.0_scaffold00069.41  25 FLTKTYQLVDDPTVDDVISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR-- 92 
                                              9*****************************************************************99.. PP

                                              TTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                             HSF_DNA-bind  72 skskekiweFkhksFkkgkkellekikrkks 102
                                                     weF+++ F++g+k+ll++i+r+k+
  evm_27.model.AmTr_v1.0_scaffold00069.41  93 -------WEFANDCFRRGEKRLLCEIHRRKN 116
                                              .......**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.9E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAPPAGEHST MVGTSEAQRS LPTPFLTKTY QLVDDPTVDD VISWNEDGST FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF RRGEKRLLCE IHRRKNPSPA  120
TTVPIQGNHP MSPTNSGDEQ VLSSNSSPAP REIITAANCT AAELIDENER LRKANTQLNQ  180
ELTQMKTLCN KIFVLMAGYA GNQQENGIAA GKLLDFWSEK GLPGDADMAV ANVAVDGADM  240
VVEEVKVEDS SPRLFGVPIG VKRAREETDG GDEGEEGIGT RGPVPGGGTQ GPMPDAVKEE  300
PLDPGAECQD TPWLKFSCRP NQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251211416129Heat shock factor protein 1
5d5v_B2e-251211416129Heat shock factor protein 1
5d5v_D2e-251211416129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857851.10.0heat stress transcription factor B-2b
SwissprotQ6Z9C82e-88HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLU5DFW50.0U5DFW5_AMBTC; Uncharacterized protein
STRINGERN193180.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-86heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]