PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.205
Common NameAMTR_s00069p00195010, LOC18447867
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GeBP
Protein Properties Length: 418aa    MW: 46710 Da    PI: 6.3246
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.205genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.59.1e-24175271297
                                    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk..sqlveKirrLKkKfkkk 68 
                                                fqr+w    ei lL+G++d+ +k+  +  +d  a+yefv+k ++++ +k  sq+veK+rr +kKfk+ 
  evm_27.model.AmTr_v1.0_scaffold00069.205 175 IFQRIWKVGEEIDLLKGFLDYSKKHP-KGRQDHAAIYEFVQKWLNSESNKsqSQVVEKLRRVRKKFKTT 242
                                               59*******************76666.6799*************9887652268*************** PP

                                    DUF573  69 vkkaksgkepsfskehdqkifelskkiWg 97 
                                                ++ + gke++f+++++q+++elskkiWg
  evm_27.model.AmTr_v1.0_scaffold00069.205 243 FAREEAGKEVNFKTPEEQDAYELSKKIWG 271
                                               ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-25176271IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MALKRKPSSS SSESSSSSSE QDDKSQYERK PAVRPPESPT SESEESEEGG EEETVRKSDE  60
EGDEDDNEEE SESEGEKVKP PTKGRSSTIR SSIKDKDKGN PDNPPTSHSA KPLSSKAMDT  120
PLLTDSPKSR PTELMNSPPP PLKRSEPAKS RQDESKDPKK RKLSEVNAEG GGKQIFQRIW  180
KVGEEIDLLK GFLDYSKKHP KGRQDHAAIY EFVQKWLNSE SNKSQSQVVE KLRRVRKKFK  240
TTFAREEAGK EVNFKTPEEQ DAYELSKKIW GDENSKEEAE FEENDSQKPK PSPVSNAKRR  300
LLSKAKAVKK ENVQNHVVGG EVPELKDPGS TLVSEWIQSG PSPHNPGFVP GFGGLGFVGG  360
EGLAKRVLGS MEKSKVQMLE EKWGRQQMLE MDVYLKRVEL VHEQTKLMVE TLKSMDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161KDPKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006858015.10.0probable transcription factor At3g04930
TrEMBLU5DDH70.0U5DDH7_AMBTC; Uncharacterized protein
STRINGERN194820.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-22DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]