PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00065.41
Common NameAMTR_s00065p00074950
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 576aa    MW: 64990 Da    PI: 4.7487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00065.41genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.6e-09538575236
                                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS- CS
                          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRt 36 
                                              ++WT  E+e l +av+++G g+Wk+I ++      gRt
  evm_27.model.AmTr_v1.0_scaffold00065.41 538 KKWTLLEEETLREAVNKYGQGNWKLILNCYSeifDGRT 575
                                              58************************999877777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.673532576IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-8534575IPR009057Homeodomain-like
SuperFamilySSF466896.4E-9534575IPR009057Homeodomain-like
CDDcd116603.12E-9538575No hitNo description
PfamPF002495.8E-7538575IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MEFLLDQRVE DWVINSLICV LPLSDRNLFL KKLILLQRIS SDMSKGLITE RILDSLEMMS  60
ELERGNQVSE NFRVSLSDAY VAVAAECSVR FLREESVNSK EYLETLRRIW EERIAHITNE  120
DNGGFVSARL KELRVEFEAA VDQPHSIASL LSAYKYRDAL NSLNRLLAVA RNEMGPSFLE  180
LAAEAACMES GDLLIEGEEG QIMEKVGNDE ELADLDAVGM ALDNTHKTGV PVNEELSTPS  240
IDMRKRGSFS REEFVLGEHL MEGMVVVESR RNRVLGKEDC IHATMHSTHI KTVFEDPLPD  300
ARQTAAQLGQ RSTTWTIDRT DESSEDILNQ IDVEKRLPLN AETGDKESSM HSQRNQMSGK  360
AKLLHTKTHT NLIEGNKYDR FLTPEVSKVQ EALKRSSLNL QTVVEDPLPN ALEIAAQLSM  420
ESKTDQTVEE GSGETQDQIV AGEHQSVIAD KGNEARSMEE VRTEDQGQSH RVPLPRPSLM  480
AWNSTACAQE WDDGSIESLS EESTNHSQGI HLPSPRTRHV SPLRMDEAGK RLMKRKNKKW  540
TLLEEETLRE AVNKYGQGNW KLILNCYSEI FDGRTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020530851.10.0uncharacterized protein LOC18446903 isoform X2
TrEMBLU5DAU90.0U5DAU9_AMBTC; Uncharacterized protein (Fragment)
STRINGERN185370.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-07MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]