PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00065.184
Common NameAMTR_s00065p00201830, LOC18447049
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 278aa    MW: 30995 Da    PI: 8.1195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00065.184genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.7e-28112170259
                                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                               +Dg++WrKYGqK+ ++++ pr+YYrC++a gCpvkkkv+r a+d ++++  Yeg H+h+
  evm_27.model.AmTr_v1.0_scaffold00065.184 112 RDGCQWRKYGQKVTRDNPSPRAYYRCSMApGCPVKKKVQRRADDSSILVAAYEGVHTHP 170
                                               7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.694106172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-27107172IPR003657WRKY domain
SuperFamilySSF1182905.1E-25108172IPR003657WRKY domain
SMARTSM007741.2E-32111171IPR003657WRKY domain
PfamPF031067.6E-24113170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDSRHHVSVQ EKVMDLEAEL ERMSRENEKL NVMLGLMNQD CNSLRSRLME TEVADGDNNK  60
ESMIPRKRKG AIQVTESSSS EDSNKKMRES PKSKVSQFCL RTDPSDTSLI LRDGCQWRKY  120
GQKVTRDNPS PRAYYRCSMA PGCPVKKKVQ RRADDSSILV AAYEGVHTHP LPTSLDAPDG  180
LESLDIIRPE PLASAPSTPF LPCSSISLSN SFPTITLDLT QTSLNQEGPR PEREARVSSN  240
YSISQQLLVQ ILASSLTRDP SFTTALADTI SRNFFRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-191101721374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857213.10.0probable WRKY transcription factor 40
TrEMBLU5D8Z10.0U5D8Z1_AMBTC; Uncharacterized protein
STRINGERN186800.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-58WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]