PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00065.157
Common NameAMTR_s00065p00184910
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 474aa    MW: 50120.8 Da    PI: 6.4364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00065.157genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12282327555
                                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               h+++Er RR+ri +++  L+el+P+a      K +Ka++L + +eY+k Lq
  evm_27.model.AmTr_v1.0_scaffold00065.157 282 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIEYVKFLQ 327
                                               99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17275337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.288277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16279336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-13281331No hitNo description
PfamPF000102.4E-9282327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MQGVNSMTTC LTSLQDLQQQ QHTTLHQNQS QNQNQQITQQ IQPHFDQHHD DLFDQMLSTL  60
PSSWAELSKS PWPELNPQTL QNSKLFSISL NSNSGTKTEN SSENISPYYD ESSLLASRLR  120
QHQISSQSSP GLKLNNAGIG AAQLISPRGV ARSPGSSSCL SDGGMMPPLP LSLGQGGQDS  180
NEETQIMVDR ARDEVEASFK AGNGVGDGLV PGLYNGFSAA SQPRASQPNN QHFYSQGQLP  240
SQTFGGGNPA MNHAPPGSGP TGNAAPARPR VRARRGQATD PHSIAERLRR ERIAERMKAL  300
QELVPNANKT DKASMLDEII EYVKFLQLQV KVLSMSRLGG AAAVAPLVAD ISSEGGGDCI  360
QANGIGRNAS GGQTPTQDSL TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLASAISS  420
ATCHTRNPSS VLMGPTNADV PSSPSMSVLT VQSAMANGTD VGAVKDAASV SKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857186.20.0transcription factor bHLH66
RefseqXP_011628047.10.0transcription factor bHLH66
RefseqXP_020530898.10.0transcription factor bHLH66
RefseqXP_020530899.10.0transcription factor bHLH66
SwissprotQ9ZUG92e-82BH066_ARATH; Transcription factor bHLH66
TrEMBLU5DE190.0U5DE19_AMBTC; Uncharacterized protein
STRINGERN186530.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-60LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]